Detailed information NTG0403525

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HWH78_RS19180
• Genome accession: NZ_CP056774
• Coordinates: 4133982..4134986 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CDN129
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4128982..4139986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWH78_RS19165 (HWH78_19165)	-	4129465..4130472 (+)	1008	WP_003163274.1	TolB family protein	-
HWH78_RS19170 (HWH78_19170)	mutS	4130598..4133165 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HWH78_RS19175 (HWH78_19175)	fdxA	4133232..4133555 (+)	324	WP_003092272.1	ferredoxin FdxA	-
HWH78_RS19180 (HWH78_19180)	rpoS	4133982..4134986 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HWH78_RS19185 (HWH78_19185)	-	4135091..4135984 (-)	894	WP_031639387.1	peptidoglycan DD-metalloendopeptidase family protein	-
HWH78_RS19190 (HWH78_19190)	-	4136030..4136665 (-)	636	WP_078451413.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HWH78_RS19195 (HWH78_19195)	surE	4136698..4137447 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HWH78_RS19200 (HWH78_19200)	truD	4137435..4138502 (-)	1068	WP_003163270.1	tRNA pseudouridine(13) synthase TruD	-
HWH78_RS19205 (HWH78_19205)	ispF	4138499..4138972 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HWH78_RS19210 (HWH78_19210)	fghA	4139043..4139894 (-)	852	WP_003163269.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=403525 HWH78_RS19180 WP_003113871.1 4133982..4134986(-) (rpoS) [Pseudomonas aeruginosa strain CDN129]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=403525 HWH78_RS19180 WP_003113871.1 4133982..4134986(-) (rpoS) [Pseudomonas aeruginosa strain CDN129]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653