Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HWH78_RS01960 Genome accession   NZ_CP056774
Coordinates   417431..418873 (+) Length   480 a.a.
NCBI ID   WP_003120852.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CDN129     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 412431..423873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH78_RS01940 (HWH78_01940) - 413099..414670 (-) 1572 WP_003163013.1 DUF4129 domain-containing protein -
  HWH78_RS01945 (HWH78_01945) - 414657..415637 (-) 981 WP_003093893.1 stage II sporulation protein M -
  HWH78_RS01950 (HWH78_01950) - 415634..416431 (-) 798 WP_003123273.1 RDD family protein -
  HWH78_RS01955 (HWH78_01955) - 416469..417206 (-) 738 WP_003101171.1 hypothetical protein -
  HWH78_RS01960 (HWH78_01960) sbcB 417431..418873 (+) 1443 WP_003120852.1 exodeoxyribonuclease I Machinery gene
  HWH78_RS01965 (HWH78_01965) mvaT 418958..419332 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  HWH78_RS01970 (HWH78_01970) purU 419592..420443 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  HWH78_RS01975 (HWH78_01975) - 420493..420705 (+) 213 WP_029610472.1 hypothetical protein -
  HWH78_RS01980 (HWH78_01980) - 420680..421681 (-) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HWH78_RS01985 (HWH78_01985) - 421678..422439 (-) 762 WP_003101179.1 DUF2334 domain-containing protein -
  HWH78_RS01990 (HWH78_01990) - 422432..423547 (-) 1116 WP_033942436.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55491.79 Da        Isoelectric Point: 5.5542

>NTDB_id=403480 HWH78_RS01960 WP_003120852.1 417431..418873(+) (sbcB) [Pseudomonas aeruginosa strain CDN129]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=403480 HWH78_RS01960 WP_003120852.1 417431..418873(+) (sbcB) [Pseudomonas aeruginosa strain CDN129]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAAATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCAGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGATGACGAAGT
GACGCGCTACAGCCTGTACCGCAATTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCCGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTTCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGGAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTTCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCTGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44