Detailed information NTG0403422

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: HWD38_RS12090
• Genome accession: NZ_CP056114
• Coordinates: 2496145..2497128 (-)
• Length: 327 a.a.
• NCBI ID: WP_001196477.1
• Uniprot ID: A0A0H2VBW7
• Organism: Escherichia coli strain Ec394-330266
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 2491145..2502128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWD38_RS12065 (HWD38_11915)	-	2492294..2492401 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
HWD38_RS12070 (HWD38_11920)	-	2492777..2492884 (-)	108	WP_000170745.1	type I toxin-antitoxin system toxin Ldr family protein	-
HWD38_RS12075 (HWD38_11925)	-	2493260..2493367 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
HWD38_RS12080 (HWD38_11930)	yhjV	2493843..2495114 (+)	1272	WP_001296513.1	aromatic amino acid transport family protein	-
HWD38_RS12085 (HWD38_11935)	dppF	2495144..2496148 (-)	1005	WP_000103571.1	dipeptide ABC transporter ATP-binding subunit DppF	-
HWD38_RS12090 (HWD38_11940)	amiE	2496145..2497128 (-)	984	WP_001196477.1	dipeptide ABC transporter ATP-binding protein	Regulator
HWD38_RS12095 (HWD38_11945)	dppC	2497139..2498041 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
HWD38_RS12100 (HWD38_11950)	dppB	2498051..2499070 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
HWD38_RS12105 (HWD38_11955)	dppA	2499377..2500984 (-)	1608	WP_001222871.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35801.38 Da
• Isoelectric Point: 6.5813

>NTDB_id=403422 HWD38_RS12090 WP_001196477.1 2496145..2497128(-) (amiE) [Escherichia coli strain Ec394-330266]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNLVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDKCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=403422 HWD38_RS12090 WP_001196477.1 2496145..2497128(-) (amiE) [Escherichia coli strain Ec394-330266]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCTGTAGACCGCATCAG
CTACAGCGTAAAACAGGGTGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCAATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAAGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCTGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATTATCGAACTGCTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATTATCGTGATGTATGCAGGCCAGGTAGTAGAAACGGGCGATGCGCACGCT
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTACGCCA
CTGACAAATGCCGTGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (24-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

3D structure

• AlphaFold DB: A0A0H2VBW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404