Detailed information NTG0403402

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HWD38_RS07335
• Genome accession: NZ_CP056114
• Coordinates: 1506551..1507543 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ec394-330266
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501551..1512543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWD38_RS07315 (HWD38_07235)	ygbM	1502189..1502965 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
HWD38_RS07320 (HWD38_07240)	ygbN	1503054..1504418 (+)	1365	WP_000104433.1	GntP family transporter	-
HWD38_RS07325 (HWD38_07245)	-	1504561..1505604 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
HWD38_RS07330 (HWD38_07250)	-	1505829..1506380 (+)	552	WP_001179444.1	flavodoxin family protein	-
HWD38_RS07335 (HWD38_07255)	rpoS	1506551..1507543 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HWD38_RS07340 (HWD38_07260)	nlpD	1507606..1508700 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
HWD38_RS07345 (HWD38_07265)	pcm	1508885..1509511 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HWD38_RS07350 (HWD38_07270)	surE	1509505..1510266 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HWD38_RS07355 (HWD38_07275)	truD	1510247..1511296 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
HWD38_RS07360 (HWD38_07280)	ispF	1511293..1511772 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HWD38_RS07365 (HWD38_07285)	ispD	1511772..1512482 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=403402 HWD38_RS07335 WP_000081550.1 1506551..1507543(-) (rpoS) [Escherichia coli strain Ec394-330266]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=403402 HWD38_RS07335 WP_000081550.1 1506551..1507543(-) (rpoS) [Escherichia coli strain Ec394-330266]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715