Detailed information NTG0403358

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HED12_RS15770
• Genome accession: NZ_CP056077
• Coordinates: 3191079..3192071 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS1170
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3186079..3197071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HED12_RS15740 (HED12_15725)	ispD	3186140..3186850 (+)	711	WP_001561936.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HED12_RS15745 (HED12_15730)	ispF	3186850..3187329 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HED12_RS15750 (HED12_15735)	truD	3187326..3188375 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
HED12_RS15755 (HED12_15740)	surE	3188356..3189117 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HED12_RS15760 (HED12_15745)	pcm	3189111..3189737 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HED12_RS15765 (HED12_15750)	nlpD	3189922..3191016 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HED12_RS15770 (HED12_15755)	rpoS	3191079..3192071 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HED12_RS15775 (HED12_15760)	-	3192242..3192793 (-)	552	WP_001179442.1	flavodoxin family protein	-
HED12_RS15780 (HED12_15765)	-	3193018..3194061 (+)	1044	WP_001161584.1	MBL fold metallo-hydrolase	-
HED12_RS15785 (HED12_15770)	ygbN	3194204..3195568 (-)	1365	WP_000104433.1	GntP family transporter	-
HED12_RS15790 (HED12_15775)	ygbM	3195657..3196433 (-)	777	WP_042073389.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=403358 HED12_RS15770 WP_000081550.1 3191079..3192071(+) (rpoS) [Escherichia coli strain MS1170]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=403358 HED12_RS15770 WP_000081550.1 3191079..3192071(+) (rpoS) [Escherichia coli strain MS1170]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTAGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715