Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HED12_RS04140 Genome accession   NZ_CP056077
Coordinates   701600..702205 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MS1170     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 696600..707205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED12_RS04120 (HED12_04105) aes 696741..697700 (+) 960 WP_000801819.1 acetyl esterase -
  HED12_RS04125 (HED12_04110) hemH 697697..698659 (-) 963 WP_001250114.1 ferrochelatase -
  HED12_RS04130 (HED12_04115) adk 698791..699435 (-) 645 WP_001313630.1 adenylate kinase -
  HED12_RS04135 (HED12_04120) htpG 699616..701490 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  HED12_RS04140 (HED12_04125) recR 701600..702205 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HED12_RS04145 (HED12_04130) ybaB 702205..702534 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HED12_RS04150 (HED12_04135) dnaX 702587..704518 (-) 1932 WP_000122032.1 DNA polymerase III subunit gamma/tau -
  HED12_RS04155 (HED12_04140) apt 704647..705198 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HED12_RS04160 (HED12_04145) ybaN 705351..705728 (-) 378 WP_001188900.1 DUF454 family protein -
  HED12_RS04165 (HED12_04150) priC 705798..706325 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  HED12_RS04170 (HED12_04155) rsmS 706339..706500 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HED12_RS24195 - 706553..706651 (-) 99 Protein_679 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=403303 HED12_RS04140 WP_001195025.1 701600..702205(-) (recR) [Escherichia coli strain MS1170]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=403303 HED12_RS04140 WP_001195025.1 701600..702205(-) (recR) [Escherichia coli strain MS1170]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGTGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment