Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HUS69_RS08805 Genome accession   NZ_CP056073
Coordinates   1869343..1870767 (-) Length   474 a.a.
NCBI ID   WP_085437461.1    Uniprot ID   -
Organism   Escherichia coli strain EC50     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864343..1875767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUS69_RS08775 (HUS69_08785) yeeZ 1864398..1865222 (+) 825 WP_000754740.1 SDR family oxidoreductase -
  HUS69_RS08780 (HUS69_08790) yeeY 1865268..1866197 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HUS69_RS08785 (HUS69_08795) yoeI 1866412..1866474 (+) 63 WP_010723108.1 membrane protein YoeI -
  HUS69_RS08790 (HUS69_08800) plaP 1866464..1867822 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HUS69_RS08795 (HUS69_08805) tsuA 1868001..1869059 (+) 1059 WP_001759318.1 thiosulfate utilization transporter TsuA/YeeE -
  HUS69_RS08800 (HUS69_08810) tsuB 1869073..1869300 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HUS69_RS08805 (HUS69_08815) sbcB 1869343..1870767 (-) 1425 WP_085437461.1 exodeoxyribonuclease I Machinery gene
  HUS69_RS08810 (HUS69_08820) - 1870949..1872127 (+) 1179 WP_025404398.1 site-specific integrase -
  HUS69_RS23410 - 1872108..1872263 (-) 156 WP_085437459.1 AlpA family transcriptional regulator -
  HUS69_RS08815 (HUS69_08825) - 1872339..1872601 (+) 263 Protein_1744 transposase -
  HUS69_RS08820 (HUS69_08830) - 1872609..1873756 (-) 1148 Protein_1745 IS30-like element IS30 family transposase -
  HUS69_RS23415 - 1873713..1873832 (-) 120 Protein_1746 hypothetical protein -
  HUS69_RS08825 (HUS69_08835) - 1873843..1874724 (+) 882 Protein_1747 IS3-like element ISEc52 family transposase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54443.68 Da        Isoelectric Point: 5.2416

>NTDB_id=403250 HUS69_RS08805 WP_085437461.1 1869343..1870767(-) (sbcB) [Escherichia coli strain EC50]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDREKMALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=403250 HUS69_RS08805 WP_085437461.1 1869343..1870767(-) (sbcB) [Escherichia coli strain EC50]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCAAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAGAGAGAAAATGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

99.156

0.589

Multiple sequence alignment