Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | MARKY_RS07725 | Genome accession | NC_015387 |
| Coordinates | 1549060..1550202 (+) | Length | 380 a.a. |
| NCBI ID | WP_013704316.1 | Uniprot ID | F2NQQ5 |
| Organism | Marinithermus hydrothermalis DSM 14884 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1544060..1555202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MARKY_RS07695 (Marky_1528) | - | 1544490..1544819 (-) | 330 | WP_013704310.1 | histidine triad nucleotide-binding protein | - |
| MARKY_RS07700 (Marky_1529) | - | 1544880..1545287 (+) | 408 | WP_041658354.1 | thioesterase family protein | - |
| MARKY_RS07705 (Marky_1530) | - | 1545296..1546285 (-) | 990 | WP_041657958.1 | tetratricopeptide repeat protein | - |
| MARKY_RS07710 (Marky_1531) | - | 1546330..1547145 (+) | 816 | WP_013704313.1 | glycosyltransferase family 2 protein | - |
| MARKY_RS07715 (Marky_1532) | - | 1547231..1547761 (+) | 531 | WP_013704314.1 | DUF5317 domain-containing protein | - |
| MARKY_RS07720 (Marky_1533) | - | 1547823..1548830 (+) | 1008 | WP_013704315.1 | isocitrate/isopropylmalate dehydrogenase family protein | - |
| MARKY_RS07725 (Marky_1534) | pilM | 1549060..1550202 (+) | 1143 | WP_013704316.1 | type IV pilus assembly protein PilM | Machinery gene |
| MARKY_RS07730 (Marky_1535) | - | 1550195..1550830 (+) | 636 | WP_013704317.1 | hypothetical protein | - |
| MARKY_RS07735 (Marky_1536) | pilO | 1550820..1551395 (+) | 576 | WP_041658357.1 | type 4a pilus biogenesis protein PilO | - |
| MARKY_RS07740 (Marky_1537) | - | 1551392..1552342 (+) | 951 | WP_013704319.1 | hypothetical protein | - |
| MARKY_RS07745 (Marky_1538) | - | 1552345..1553916 (+) | 1572 | WP_013704320.1 | secretin N-terminal domain-containing protein | - |
| MARKY_RS07750 (Marky_1539) | - | 1553990..1554319 (-) | 330 | WP_013704321.1 | metal-sulfur cluster assembly factor | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 41754.05 Da Isoelectric Point: 4.4129
>NTDB_id=40325 MARKY_RS07725 WP_013704316.1 1549060..1550202(+) (pilM) [Marinithermus hydrothermalis DSM 14884]
MRRILSNWLQPRIEALGLEIGAANLKCVELSGTPPALKAFAMRPTPPGAVQGGNILEPGALAAEIREMLAEMRTRKRYVV
AGLSNLAVITRILQVPKMTEKELEEAIQWEAERYIPFPIDEVVLDFAPLTPPEEVPDGEQLDVVIAAARHEIIAQLVETL
KEASLEPVVLDIKPFAGLRSIAAQLAPNQDGHAPVSIYLEIGAESSTLVLLRGQRLLMHRNIGISGQDFTEAIARAFNLD
MPTAETTKLEYGLVTIPTEDEEALLDFDAERERYNPARMYDAIRPVLVDLTTELRRSLEFFRVQAGDIEIEQGFITGGGS
KLRGLPGLLSEALGLQLTPIDPWASITVDERQFDPNHLRAIGPEFTVPVGLALRGVDPLD
MRRILSNWLQPRIEALGLEIGAANLKCVELSGTPPALKAFAMRPTPPGAVQGGNILEPGALAAEIREMLAEMRTRKRYVV
AGLSNLAVITRILQVPKMTEKELEEAIQWEAERYIPFPIDEVVLDFAPLTPPEEVPDGEQLDVVIAAARHEIIAQLVETL
KEASLEPVVLDIKPFAGLRSIAAQLAPNQDGHAPVSIYLEIGAESSTLVLLRGQRLLMHRNIGISGQDFTEAIARAFNLD
MPTAETTKLEYGLVTIPTEDEEALLDFDAERERYNPARMYDAIRPVLVDLTTELRRSLEFFRVQAGDIEIEQGFITGGGS
KLRGLPGLLSEALGLQLTPIDPWASITVDERQFDPNHLRAIGPEFTVPVGLALRGVDPLD
Nucleotide
Download Length: 1143 bp
>NTDB_id=40325 MARKY_RS07725 WP_013704316.1 1549060..1550202(+) (pilM) [Marinithermus hydrothermalis DSM 14884]
GTGCGGAGGATATTAAGCAACTGGTTGCAGCCCCGTATCGAGGCTTTGGGCCTGGAGATCGGCGCCGCCAACCTCAAGTG
CGTCGAGCTGAGCGGCACCCCCCCAGCCCTCAAAGCTTTCGCCATGCGCCCCACCCCTCCCGGCGCTGTACAAGGGGGCA
ACATCCTCGAGCCGGGCGCACTCGCGGCCGAGATCCGGGAGATGCTGGCCGAGATGCGAACCCGTAAACGCTACGTTGTA
GCGGGTCTCTCCAACCTGGCCGTCATCACCCGCATCCTCCAAGTCCCCAAAATGACCGAAAAGGAGTTGGAAGAGGCCAT
CCAGTGGGAAGCCGAGCGCTACATCCCCTTCCCCATCGACGAGGTAGTGCTCGACTTCGCCCCCCTCACCCCCCCCGAGG
AAGTCCCCGACGGGGAACAGCTCGACGTGGTGATCGCCGCGGCCCGGCACGAGATCATCGCGCAGCTCGTCGAAACCCTA
AAAGAAGCCTCCCTCGAGCCGGTGGTGCTCGACATCAAGCCCTTTGCTGGTCTCAGGTCCATCGCCGCTCAGCTCGCCCC
CAACCAGGACGGGCACGCTCCCGTCTCCATCTACCTAGAGATCGGCGCGGAATCCTCCACCCTGGTCCTCCTCCGAGGCC
AACGCCTCCTCATGCACCGCAACATCGGTATCTCCGGCCAGGACTTCACCGAAGCCATCGCTCGGGCCTTCAACCTGGAC
ATGCCCACAGCCGAAACCACCAAGCTCGAGTATGGGTTGGTCACCATCCCCACCGAGGATGAGGAGGCCCTCCTCGACTT
TGACGCGGAGCGTGAACGATACAACCCCGCCCGTATGTACGACGCCATTCGGCCGGTGCTGGTGGACCTGACGACCGAAC
TTCGGCGGAGCCTGGAGTTCTTCCGCGTACAAGCCGGGGACATCGAGATCGAGCAGGGCTTTATCACCGGTGGGGGCAGC
AAACTGCGCGGCCTACCAGGCCTGTTGAGCGAAGCCCTGGGCCTGCAACTCACCCCGATAGATCCCTGGGCCTCCATCAC
GGTCGACGAGCGGCAGTTCGATCCCAACCACCTACGCGCGATCGGGCCGGAGTTCACCGTGCCCGTCGGTCTCGCGCTTC
GGGGGGTGGATCCCCTTGATTAA
GTGCGGAGGATATTAAGCAACTGGTTGCAGCCCCGTATCGAGGCTTTGGGCCTGGAGATCGGCGCCGCCAACCTCAAGTG
CGTCGAGCTGAGCGGCACCCCCCCAGCCCTCAAAGCTTTCGCCATGCGCCCCACCCCTCCCGGCGCTGTACAAGGGGGCA
ACATCCTCGAGCCGGGCGCACTCGCGGCCGAGATCCGGGAGATGCTGGCCGAGATGCGAACCCGTAAACGCTACGTTGTA
GCGGGTCTCTCCAACCTGGCCGTCATCACCCGCATCCTCCAAGTCCCCAAAATGACCGAAAAGGAGTTGGAAGAGGCCAT
CCAGTGGGAAGCCGAGCGCTACATCCCCTTCCCCATCGACGAGGTAGTGCTCGACTTCGCCCCCCTCACCCCCCCCGAGG
AAGTCCCCGACGGGGAACAGCTCGACGTGGTGATCGCCGCGGCCCGGCACGAGATCATCGCGCAGCTCGTCGAAACCCTA
AAAGAAGCCTCCCTCGAGCCGGTGGTGCTCGACATCAAGCCCTTTGCTGGTCTCAGGTCCATCGCCGCTCAGCTCGCCCC
CAACCAGGACGGGCACGCTCCCGTCTCCATCTACCTAGAGATCGGCGCGGAATCCTCCACCCTGGTCCTCCTCCGAGGCC
AACGCCTCCTCATGCACCGCAACATCGGTATCTCCGGCCAGGACTTCACCGAAGCCATCGCTCGGGCCTTCAACCTGGAC
ATGCCCACAGCCGAAACCACCAAGCTCGAGTATGGGTTGGTCACCATCCCCACCGAGGATGAGGAGGCCCTCCTCGACTT
TGACGCGGAGCGTGAACGATACAACCCCGCCCGTATGTACGACGCCATTCGGCCGGTGCTGGTGGACCTGACGACCGAAC
TTCGGCGGAGCCTGGAGTTCTTCCGCGTACAAGCCGGGGACATCGAGATCGAGCAGGGCTTTATCACCGGTGGGGGCAGC
AAACTGCGCGGCCTACCAGGCCTGTTGAGCGAAGCCCTGGGCCTGCAACTCACCCCGATAGATCCCTGGGCCTCCATCAC
GGTCGACGAGCGGCAGTTCGATCCCAACCACCTACGCGCGATCGGGCCGGAGTTCACCGTGCCCGTCGGTCTCGCGCTTC
GGGGGGTGGATCCCCTTGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Thermus thermophilus HB27 |
62.632 |
100 |
0.626 |