Detailed information NTG0403237

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUS69_RS05065
• Genome accession: NZ_CP056073
• Coordinates: 1071922..1072914 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC50
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1066922..1077914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUS69_RS05035 (HUS69_05045)	ispD	1066983..1067693 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HUS69_RS05040 (HUS69_05050)	ispF	1067693..1068172 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUS69_RS05045 (HUS69_05055)	truD	1068169..1069218 (+)	1050	WP_186240745.1	tRNA pseudouridine(13) synthase TruD	-
HUS69_RS05050 (HUS69_05060)	surE	1069199..1069960 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HUS69_RS05055 (HUS69_05065)	pcm	1069954..1070580 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HUS69_RS05060 (HUS69_05070)	nlpD	1070765..1071859 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HUS69_RS05065 (HUS69_05075)	rpoS	1071922..1072914 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HUS69_RS05070 (HUS69_05080)	ygbN	1073008..1074372 (-)	1365	WP_089622822.1	GntP family transporter	-
HUS69_RS05075 (HUS69_05085)	ygbM	1074461..1075237 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
HUS69_RS05080 (HUS69_05090)	ygbL	1075242..1075880 (-)	639	WP_001278994.1	aldolase	-
HUS69_RS05085 (HUS69_05095)	otnK	1075877..1077139 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=403237 HUS69_RS05065 WP_000081550.1 1071922..1072914(+) (rpoS) [Escherichia coli strain EC50]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=403237 HUS69_RS05065 WP_000081550.1 1071922..1072914(+) (rpoS) [Escherichia coli strain EC50]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715