Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   HUW39_RS24750 Genome accession   NZ_CP056036
Coordinates   5159924..5160916 (-) Length   330 a.a.
NCBI ID   WP_074403618.1    Uniprot ID   -
Organism   Escherichia coli strain EC31     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5154924..5165916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW39_RS24740 (HUW39_24740) yieP 5157816..5158508 (+) 693 WP_001131178.1 FadR/GntR family transcriptional regulator -
  HUW39_RS24745 (HUW39_24745) mdtD 5158531..5159958 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  HUW39_RS24750 (HUW39_24750) cytR 5159924..5160916 (-) 993 WP_074403618.1 ribose operon transcriptional repressor RbsR Regulator
  HUW39_RS24755 (HUW39_24755) rbsK 5160920..5161849 (-) 930 WP_001309865.1 ribokinase -
  HUW39_RS24760 (HUW39_24760) rbsB 5161975..5162865 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  HUW39_RS24765 (HUW39_24765) rbsC 5162890..5163855 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  HUW39_RS24770 (HUW39_24770) rbsA 5163860..5165365 (-) 1506 WP_000387761.1 ribose ABC transporter ATP-binding protein RbsA -
  HUW39_RS24775 (HUW39_24775) rbsD 5165373..5165792 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36643.96 Da        Isoelectric Point: 5.2141

>NTDB_id=403214 HUW39_RS24750 WP_074403618.1 5159924..5160916(-) (cytR) [Escherichia coli strain EC31]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTMMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=403214 HUW39_RS24750 WP_074403618.1 5159924..5160916(-) (cytR) [Escherichia coli strain EC31]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCATGATGATGGACTGGGCACCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGTGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment