Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HUW39_RS09610 Genome accession   NZ_CP056036
Coordinates   2028322..2029749 (-) Length   475 a.a.
NCBI ID   WP_000980626.1    Uniprot ID   -
Organism   Escherichia coli strain EC31     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2023322..2034749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW39_RS09585 (HUW39_09585) hisL 2024346..2024396 (-) 51 WP_001364200.1 his operon leader peptide -
  HUW39_RS09590 (HUW39_09590) yeeZ 2024823..2025647 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HUW39_RS09595 (HUW39_09595) yeeY 2025693..2026622 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HUW39_RS09600 (HUW39_09600) yoeI 2026837..2026899 (+) 63 WP_010723108.1 membrane protein YoeI -
  HUW39_RS09605 (HUW39_09605) plaP 2026889..2028247 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HUW39_RS09610 (HUW39_09610) sbcB 2028322..2029749 (-) 1428 WP_000980626.1 exodeoxyribonuclease I Machinery gene
  HUW39_RS09615 (HUW39_09615) dacD 2029958..2031124 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HUW39_RS09620 (HUW39_09620) sbmC 2031243..2031716 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  HUW39_RS09625 (HUW39_09625) yeeA 2031915..2032973 (+) 1059 WP_001200877.1 FUSC family protein -
  HUW39_RS09630 (HUW39_09630) tmaR 2033145..2033474 (+) 330 WP_000450409.1 DUF496 family protein -
  HUW39_RS09635 (HUW39_09635) - 2033575..2034018 (-) 444 WP_001189433.1 EutP/PduV family microcompartment system protein -
  HUW39_RS09640 (HUW39_09640) pduU 2034023..2034373 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.81 Da        Isoelectric Point: 5.4700

>NTDB_id=403169 HUW39_RS09610 WP_000980626.1 2028322..2029749(-) (sbcB) [Escherichia coli strain EC31]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=403169 HUW39_RS09610 WP_000980626.1 2028322..2029749(-) (sbcB) [Escherichia coli strain EC31]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCT
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGACGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment