Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HUW39_RS06020 Genome accession   NZ_CP056036
Coordinates   1257819..1258334 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252819..1263334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW39_RS05975 (HUW39_05980) csrA 1253272..1253457 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HUW39_RS06005 (HUW39_06010) yqaB 1255049..1255615 (+) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HUW39_RS06010 (HUW39_06015) yqaA 1255612..1256040 (+) 429 WP_001287454.1 YqaA family protein -
  HUW39_RS06015 (HUW39_06020) gshA 1256113..1257669 (+) 1557 WP_000611791.1 glutamate--cysteine ligase -
  HUW39_RS06020 (HUW39_06025) luxS 1257819..1258334 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HUW39_RS06025 (HUW39_06030) emrB 1258398..1259936 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HUW39_RS06030 (HUW39_06035) emrA 1259953..1261125 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HUW39_RS06035 (HUW39_06040) emrR 1261252..1261782 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HUW39_RS06040 (HUW39_06045) ygaH 1261873..1262208 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  HUW39_RS06045 (HUW39_06050) ygaZ 1262198..1262935 (-) 738 WP_000445659.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=403159 HUW39_RS06020 WP_001130211.1 1257819..1258334(+) (luxS) [Escherichia coli strain EC31]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=403159 HUW39_RS06020 WP_001130211.1 1257819..1258334(+) (luxS) [Escherichia coli strain EC31]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment