Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   SALIVA_RS07830 Genome accession   NC_017595
Coordinates   1744848..1745585 (-) Length   245 a.a.
NCBI ID   WP_014634883.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739848..1750585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS07810 (SALIVA_1594) - 1741173..1741421 (-) 249 WP_002884680.1 KH domain-containing protein -
  SALIVA_RS07815 (SALIVA_1595) rpsP 1741433..1741705 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  SALIVA_RS07820 (SALIVA_1596) - 1741868..1743247 (-) 1380 WP_014634881.1 hypothetical protein -
  SALIVA_RS07825 (SALIVA_1597) - 1743359..1744537 (-) 1179 WP_041826695.1 sensor histidine kinase -
  SALIVA_RS07830 (SALIVA_1598) comE/comE1 1744848..1745585 (-) 738 WP_014634883.1 LytTR family DNA-binding domain-containing protein Regulator
  SALIVA_RS07835 (SALIVA_1599) - 1745799..1747121 (+) 1323 WP_014634884.1 matrixin family metalloprotease -
  SALIVA_RS07845 (SALIVA_1600) tehB 1747900..1748778 (+) 879 WP_014634885.1 SAM-dependent methyltransferase TehB -
  SALIVA_RS07850 (SALIVA_1601) - 1748861..1749613 (-) 753 WP_014634886.1 DUF4767 domain-containing protein -
  SALIVA_RS07855 (SALIVA_1602) - 1749710..1750060 (-) 351 Protein_1505 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28064.02 Da        Isoelectric Point: 4.7123

>NTDB_id=40313 SALIVA_RS07830 WP_014634883.1 1744848..1745585(-) (comE/comE1) [Streptococcus salivarius JIM8777]
MLSIIVLEDDALQRHRVSRLLDEAVEESKVVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDADLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=40313 SALIVA_RS07830 WP_014634883.1 1744848..1745585(-) (comE/comE1) [Streptococcus salivarius JIM8777]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGTCGTTGTTGATGGGATTACCTTTTATGAGCAAGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATGCAGATCTTAAGAGAGCCTTAGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTGACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAAACAGCCCCTGTGCCACATAAGTTGATCGCTCACACCAAGTCAAACCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTATCACGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.037

99.184

0.367

Multiple sequence alignment