Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HU676_RS08395 Genome accession   NZ_CP055259
Coordinates   1784824..1786251 (-) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain AH62     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779824..1791251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU676_RS08365 (HU676_08365) yeeZ 1779879..1780703 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HU676_RS08370 (HU676_08370) yeeY 1780749..1781678 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  HU676_RS08375 (HU676_08375) yoeI 1781893..1781955 (+) 63 WP_010723108.1 membrane protein YoeI -
  HU676_RS08380 (HU676_08380) plaP 1781945..1783303 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HU676_RS08385 (HU676_08385) tsuA 1783482..1784540 (+) 1059 WP_176256508.1 thiosulfate utilization transporter TsuA/YeeE -
  HU676_RS08390 (HU676_08390) tsuB 1784554..1784781 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HU676_RS08395 (HU676_08395) sbcB 1784824..1786251 (-) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  HU676_RS08400 (HU676_08400) dacD 1786440..1787606 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HU676_RS08405 (HU676_08405) sbmC 1787725..1788198 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  HU676_RS08410 (HU676_08410) yeeA 1788397..1789455 (+) 1059 WP_001200891.1 FUSC family protein -
  HU676_RS08415 (HU676_08415) tmaR 1789627..1789956 (+) 330 WP_000450409.1 DUF496 family protein -
  HU676_RS08420 (HU676_08420) - 1790057..1790239 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HU676_RS08425 (HU676_08425) - 1790293..1790439 (+) 147 Protein_1661 transposase domain-containing protein -
  HU676_RS08430 (HU676_08430) - 1790728..1790808 (-) 81 Protein_1662 hypothetical protein -
  HU676_RS08435 (HU676_08435) yeeW 1790854..1791048 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=403083 HU676_RS08395 WP_000980610.1 1784824..1786251(-) (sbcB) [Escherichia coli strain AH62]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=403083 HU676_RS08395 WP_000980610.1 1784824..1786251(-) (sbcB) [Escherichia coli strain AH62]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581