Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BGLA_RS17330 Genome accession   NC_015381
Coordinates   3963836..3965341 (+) Length   501 a.a.
NCBI ID   WP_013699407.1    Uniprot ID   A0A560VPW2
Organism   Burkholderia gladioli BSR3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3958836..3970341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGLA_RS17305 (bgla_1g34820) kdsD 3960045..3961028 (+) 984 WP_013699402.1 arabinose 5-phosphate isomerase KdsD -
  BGLA_RS17310 (bgla_1g34830) - 3961028..3961567 (+) 540 WP_013699403.1 KdsC family phosphatase -
  BGLA_RS17315 (bgla_1g34840) lptC 3961571..3962185 (+) 615 WP_013699404.1 LPS export ABC transporter periplasmic protein LptC -
  BGLA_RS17320 (bgla_1g34850) lptA 3962204..3962872 (+) 669 WP_013699405.1 lipopolysaccharide transport periplasmic protein LptA -
  BGLA_RS17325 (bgla_1g34860) lptB 3962869..3963645 (+) 777 WP_013699406.1 LPS export ABC transporter ATP-binding protein -
  BGLA_RS17330 (bgla_1g34870) rpoN/rpoN1 3963836..3965341 (+) 1506 WP_013699407.1 RNA polymerase factor sigma-54 Machinery gene
  BGLA_RS17335 (bgla_1g34880) hpf 3965492..3965857 (+) 366 WP_013699408.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BGLA_RS17340 (bgla_1g34890) - 3966071..3966583 (+) 513 WP_013699409.1 PTS sugar transporter subunit IIA -
  BGLA_RS17345 (bgla_1g34900) hprK 3966708..3967676 (+) 969 WP_013699410.1 HPr(Ser) kinase/phosphatase -
  BGLA_RS17350 (bgla_1g34910) rapZ 3967782..3968675 (+) 894 WP_013699411.1 RNase adapter RapZ -
  BGLA_RS17355 (bgla_1g34920) - 3968708..3969343 (+) 636 WP_013699412.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55047.01 Da        Isoelectric Point: 4.9483

>NTDB_id=40308 BGLA_RS17330 WP_013699407.1 3963836..3965341(+) (rpoN/rpoN1) [Burkholderia gladioli BSR3]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDEWIASPLRVAADGSLIAQSPPSSTPEPMHG
GGSNGSEASGDRAERDDSRNGDDYDYNADSGDSGQWNLDDYGRSSGASDDDDLPPLQVHEASTSLREHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLGAGLDEVLTDLPEELEVDLDELGAALALLHSFDPAGVGARSASECLRLQLLRLDPSPTRTL
SLDIVSQHLELLAARDFTRLRKQLKANDDELREAHALIRSLEPFPGAAYGKTEADYVVPDIMVRKSGQNWLAELNPEVVP
KLRINHLYANILRNSRGDPGAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDQKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=40308 BGLA_RS17330 WP_013699407.1 3963836..3965341(+) (rpoN/rpoN1) [Burkholderia gladioli BSR3]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCACCTCGCGCTCACGCCCCAGCTCCAGCAGTCGATCCGGCTGCTGCA
GCTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCCCAGAATCCGCTGCTCGAGAACGACGAATGGATCG
CGAGCCCGCTGCGGGTGGCCGCCGACGGCTCGCTGATCGCGCAGAGCCCGCCCTCCTCGACGCCCGAGCCGATGCACGGC
GGCGGCTCGAACGGCAGCGAAGCCTCGGGCGATCGTGCCGAACGCGACGACTCGCGCAATGGCGACGACTACGACTACAA
CGCCGACAGCGGCGATTCGGGTCAGTGGAATCTCGACGACTACGGTCGCTCCTCGGGCGCCTCCGACGACGACGACCTCC
CGCCGCTGCAGGTGCACGAGGCCTCGACCTCGCTGCGCGAGCATCTGTCCGCGCAATTGCGGGTGACCCAGGCGGGTCCG
CGCGACCGCGCGCTGGTGATGTTCCTGATCGAATCGCTCGACGACGACGGTTATCTCGGCGCGGGGCTCGACGAGGTGTT
GACCGACCTGCCCGAGGAACTGGAAGTCGATCTCGACGAACTGGGCGCCGCGCTGGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTGGGGGCGCGCTCCGCATCGGAATGCTTGCGCCTGCAATTGTTGCGACTCGATCCGTCCCCCACGCGCACGCTG
TCGCTCGACATCGTCTCGCAGCATCTCGAATTGCTGGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAGTTGAAGGCCAA
CGACGACGAGCTGCGCGAGGCCCATGCACTGATCCGCTCGCTCGAGCCCTTCCCGGGCGCCGCCTATGGCAAGACCGAGG
CGGACTACGTGGTGCCCGACATCATGGTCAGGAAGAGCGGCCAGAACTGGCTCGCGGAGCTCAATCCCGAGGTGGTGCCG
AAGCTGCGCATCAACCACTTGTACGCCAATATCCTGCGCAACAGCCGGGGCGATCCGGGCGCCGGTTCGCTCAAGCAGCA
GCTCCAGGAAGCGCGCTGGCTGATCAAGAATATCCAGCAGCGATTCGAGACCATCCTGCGTGTCGCGCAGGCCATCGTGG
AGCGTCAGAAGAACTTTTTTGCGCATGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCTCCCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGCACTCTTGAATTTAAGTACTT
CTTCGGATCGCACGTGTCGACGGATACCGGGGGCGCTGCCTCTTCCACGGCAATCCGCGCCCTCATCAAGCAACTGATAG
GAGCCGAAGACCAGAAATCTCCTCTTTCGGACAGCCGAATAGCCGAGCTGCTGGCGGAACAAGGCTTCGTGGTCGCGCGC
CGCACCGTTGCGAAGTATCGCGAAGCCCTCAAGATCCCCGCGGTGAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A560VPW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.379

100

0.691

Multiple sequence alignment