Detailed information NTG0402935

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUU83_RS17185
• Genome accession: NZ_CP055251
• Coordinates: 3560504..3561496 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AH01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3555504..3566496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUU83_RS17160 (HUU83_17160)	ygbN	3556159..3557523 (+)	1365	WP_000104439.1	GntP family transporter	-
HUU83_RS17165 (HUU83_17165)	-	3557562..3557798 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HUU83_RS17170 (HUU83_17170)	-	3557809..3559236 (-)	1428	WP_021578698.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HUU83_RS17175 (HUU83_17175)	-	3559236..3559829 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HUU83_RS17180 (HUU83_17180)	-	3559976..3560383 (+)	408	WP_001208072.1	MarR family transcriptional regulator	-
HUU83_RS17185 (HUU83_17185)	rpoS	3560504..3561496 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HUU83_RS17190 (HUU83_17190)	nlpD	3561559..3562653 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HUU83_RS17195 (HUU83_17195)	pcm	3562838..3563464 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HUU83_RS17200 (HUU83_17200)	surE	3563458..3564219 (-)	762	WP_057697505.1	5'/3'-nucleotidase SurE	-
HUU83_RS17205 (HUU83_17205)	truD	3564200..3565249 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HUU83_RS17210 (HUU83_17210)	ispF	3565246..3565725 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUU83_RS17215 (HUU83_17215)	ispD	3565725..3566435 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=402935 HUU83_RS17185 WP_000081550.1 3560504..3561496(-) (rpoS) [Escherichia coli strain AH01]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=402935 HUU83_RS17185 WP_000081550.1 3560504..3561496(-) (rpoS) [Escherichia coli strain AH01]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715