Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SALIVA_RS05320 Genome accession   NC_017595
Coordinates   1111489..1112559 (+) Length   356 a.a.
NCBI ID   WP_014634487.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106489..1117559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS05300 (SALIVA_1085) glgP 1106775..1109036 (+) 2262 WP_014634484.1 glycogen/starch/alpha-glucan family phosphorylase -
  SALIVA_RS10725 (SALIVA_1087) - 1109468..1110091 (-) 624 WP_231848719.1 hypothetical protein -
  SALIVA_RS05315 (SALIVA_1088) - 1110215..1111204 (+) 990 WP_014634486.1 lipoate--protein ligase -
  SALIVA_RS05320 (SALIVA_1089) xerS 1111489..1112559 (+) 1071 WP_014634487.1 tyrosine recombinase XerS Machinery gene
  SALIVA_RS05325 (SALIVA_1090) - 1112723..1115263 (-) 2541 WP_014634488.1 M1 family metallopeptidase -
  SALIVA_RS05330 (SALIVA_1091) phoU 1115398..1116051 (-) 654 WP_014634489.1 phosphate signaling complex protein PhoU -
  SALIVA_RS05335 (SALIVA_1092) pstB 1116080..1116838 (-) 759 WP_002884992.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41387.43 Da        Isoelectric Point: 9.3734

>NTDB_id=40288 SALIVA_RS05320 WP_014634487.1 1111489..1112559(+) (xerS) [Streptococcus salivarius JIM8777]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENITKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKSYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=40288 SALIVA_RS05320 WP_014634487.1 1111489..1112559(+) (xerS) [Streptococcus salivarius JIM8777]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTTACAACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGATTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATATAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACTACTATTAA
TCGTACACTTTCAGCCCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAAAAA
CTCTTTCTTGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCCAA
ATCTTCGTTTTATAAGAATAAAGAACGTGATTTGGCTATCATTGCCTTGCTACTGGCTTCAGGTGTTCGACTCTCTGAAG
CTGTTAATCTGGACCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTCACTCGAAAAGGTGGCAAACGGGACTCA
GTTAATGTAGCAAGTTTTGCAAAGTCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAAATTCGTGTGACTCCCCATAAACTACGACATACTCTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCACATCGTCAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831

Multiple sequence alignment