Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC27_RS13970 Genome accession   NZ_CP046336
Coordinates   2957744..2959120 (-) Length   458 a.a.
NCBI ID   WP_105825803.1    Uniprot ID   -
Organism   Burkholderia multivorans strain FDAARGOS_719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2952744..2964120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC27_RS13950 (FOC27_13950) cls 2953254..2954693 (+) 1440 WP_006402631.1 cardiolipin synthase -
  FOC27_RS13955 (FOC27_13955) - 2954735..2955214 (-) 480 WP_059783370.1 glutathione peroxidase -
  FOC27_RS13960 (FOC27_13960) - 2955350..2957281 (+) 1932 WP_012213128.1 ATP-binding cassette domain-containing protein -
  FOC27_RS13965 (FOC27_13965) - 2957340..2957606 (-) 267 WP_006402628.1 DUF2866 domain-containing protein -
  FOC27_RS13970 (FOC27_13970) radA 2957744..2959120 (-) 1377 WP_105825803.1 DNA repair protein RadA Machinery gene
  FOC27_RS13975 (FOC27_13975) alr 2959131..2960201 (-) 1071 WP_155824378.1 alanine racemase -
  FOC27_RS13980 (FOC27_13980) lplT 2960420..2961727 (+) 1308 WP_006402624.1 lysophospholipid transporter LplT -
  FOC27_RS13985 (FOC27_13985) thiD 2961786..2962595 (+) 810 WP_155824379.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FOC27_RS13990 (FOC27_13990) - 2962614..2963588 (-) 975 WP_155824380.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48762.26 Da        Isoelectric Point: 7.2044

>NTDB_id=402860 FOC27_RS13970 WP_105825803.1 2957744..2959120(-) (radA) [Burkholderia multivorans strain FDAARGOS_719]
MAKQKTVYVCSECGGQTPKWQGQCPSCHAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=402860 FOC27_RS13970 WP_105825803.1 2957744..2959120(-) (radA) [Burkholderia multivorans strain FDAARGOS_719]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCACGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTTGCGAAACGGGCGC
CCGTCCAGCGTCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAGGGCGCCGCGCCGGCCGCCGAGTTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATTGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAAGTGCGCGAGTGCGCGGCGCAACTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAAGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCAATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCCTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAAGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.204

100

0.465
  radA Streptococcus pneumoniae D39

46.204

100

0.465
  radA Streptococcus pneumoniae R6

46.204

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.204

100

0.465
  radA Streptococcus mitis SK321

46.578

98.908

0.461
  radA Streptococcus mitis NCTC 12261

46.358

98.908

0.459

Multiple sequence alignment