Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HVV27_RS07000 Genome accession   NZ_CP055246
Coordinates   1378544..1379152 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain TSPY767     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1373544..1384152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVV27_RS06970 (HVV27_06970) - 1373791..1374273 (+) 483 WP_021299075.1 S-ribosylhomocysteine lyase -
  HVV27_RS06975 (HVV27_06975) - 1374418..1375887 (-) 1470 WP_002983629.1 cell division site-positioning protein MapZ family protein -
  HVV27_RS06980 (HVV27_06980) - 1375901..1377055 (-) 1155 WP_011528863.1 class I SAM-dependent RNA methyltransferase -
  HVV27_RS06990 (HVV27_06990) gpsB 1377500..1377826 (-) 327 WP_002983626.1 cell division regulator GpsB -
  HVV27_RS06995 (HVV27_06995) - 1377948..1378463 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  HVV27_RS07000 (HVV27_07000) recU 1378544..1379152 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  HVV27_RS07005 (HVV27_07005) pbp1a 1379139..1381304 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  HVV27_RS07010 (HVV27_07010) pepC 1381771..1383108 (-) 1338 WP_011528864.1 aminopeptidase C -
  HVV27_RS07015 (HVV27_07015) nadE 1383293..1384117 (-) 825 WP_021299057.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=402859 HVV27_RS07000 WP_002983622.1 1378544..1379152(+) (recU) [Streptococcus pyogenes strain TSPY767]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=402859 HVV27_RS07000 WP_002983622.1 1378544..1379152(+) (recU) [Streptococcus pyogenes strain TSPY767]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTCGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5