Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | FOB92_RS00865 | Genome accession | NZ_CP046335 |
| Coordinates | 180880..181833 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345104.1 | Uniprot ID | - |
| Organism | Streptococcus mitis strain FDAARGOS_684 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 175880..186833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB92_RS00820 (FOB92_00820) | - | 176051..176416 (+) | 366 | WP_000286405.1 | DUF1033 family protein | - |
| FOB92_RS00825 (FOB92_00825) | comGA/cglA/cilD | 176492..177433 (+) | 942 | WP_000249545.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FOB92_RS00830 (FOB92_00830) | comGB/cglB | 177381..178397 (+) | 1017 | WP_004238896.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FOB92_RS00835 (FOB92_00835) | comGC/cglC | 178399..178722 (+) | 324 | WP_000738641.1 | comG operon protein ComGC | Machinery gene |
| FOB92_RS00840 (FOB92_00840) | comGD/cglD | 178685..179119 (+) | 435 | WP_029689647.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FOB92_RS00845 (FOB92_00845) | comGE/cglE | 179082..179384 (+) | 303 | WP_045597458.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| FOB92_RS00850 (FOB92_00850) | comGF/cglF | 179347..179808 (+) | 462 | WP_000250509.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FOB92_RS00855 (FOB92_00855) | comGG/cglG | 179786..180199 (+) | 414 | WP_000265657.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| FOB92_RS00860 (FOB92_00860) | - | 180232..180819 (+) | 588 | WP_000679792.1 | class I SAM-dependent methyltransferase | - |
| FOB92_RS00865 (FOB92_00865) | comYH | 180880..181833 (+) | 954 | WP_000345104.1 | class I SAM-dependent methyltransferase | Machinery gene |
| FOB92_RS00870 (FOB92_00870) | - | 181883..183073 (+) | 1191 | WP_000167778.1 | acetate kinase | - |
| FOB92_RS00875 (FOB92_00875) | rnpA | 183223..183594 (+) | 372 | WP_000739243.1 | ribonuclease P protein component | - |
| FOB92_RS00880 (FOB92_00880) | - | 183569..184393 (+) | 825 | WP_004238894.1 | membrane protein insertase YidC | - |
| FOB92_RS00885 (FOB92_00885) | jag | 184411..185400 (+) | 990 | WP_000260003.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| FOB92_RS00890 (FOB92_00890) | - | 185451..186074 (+) | 624 | WP_000932648.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35637.87 Da Isoelectric Point: 4.2748
>NTDB_id=402780 FOB92_RS00865 WP_000345104.1 180880..181833(+) (comYH) [Streptococcus mitis strain FDAARGOS_684]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVAARHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKSEIPVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVAARHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKSEIPVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=402780 FOB92_RS00865 WP_000345104.1 180880..181833(+) (comYH) [Streptococcus mitis strain FDAARGOS_684]
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTTTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCAGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTGGGCGCTACTTTCTTGACTTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTGATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCAGCGCGCCATCAAGTAGCCTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTATTGAAAGGGTGGTTGAAAGAAGAGGCAAATCTAGTTGCCATGATCAGTCTCCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCCAAGACGATTTTTATCTTACAAAAGAAAAGTGAAATACCAGTAGAACCCTTTGTTTATCCACTTGCTA
GCCTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTTTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCAGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTGGGCGCTACTTTCTTGACTTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTGATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCAGCGCGCCATCAAGTAGCCTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTATTGAAAGGGTGGTTGAAAGAAGAGGCAAATCTAGTTGCCATGATCAGTCTCCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCCAAGACGATTTTTATCTTACAAAAGAAAAGTGAAATACCAGTAGAACCCTTTGTTTATCCACTTGCTA
GCCTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
55.272 |
98.738 |
0.546 |
| comYH | Streptococcus mutans UA159 |
54.952 |
98.738 |
0.543 |