Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SALIVA_RS02705 Genome accession   NC_017595
Coordinates   550732..552519 (+) Length   595 a.a.
NCBI ID   WP_014634073.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 545732..557519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02690 (SALIVA_0542) - 547045..547311 (+) 267 WP_014634070.1 DUF3173 family protein -
  SALIVA_RS02695 (SALIVA_0543) - 547301..548526 (+) 1226 Protein_477 tyrosine-type recombinase/integrase -
  SALIVA_RS02700 (SALIVA_0544) rcrP 548983..550719 (+) 1737 WP_014634072.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02705 (SALIVA_0545) rcrQ 550732..552519 (+) 1788 WP_014634073.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02710 (SALIVA_0546) queA 552616..553659 (-) 1044 WP_014634074.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SALIVA_RS02715 (SALIVA_0547) - 553811..554512 (+) 702 WP_014634075.1 glucosamine-6-phosphate deaminase -
  SALIVA_RS02720 (SALIVA_0548) - 554661..555956 (-) 1296 WP_014634076.1 GHKL domain-containing protein -
  SALIVA_RS02725 (SALIVA_0549) - 555956..556666 (-) 711 WP_014634077.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66685.73 Da        Isoelectric Point: 5.1474

>NTDB_id=40270 SALIVA_RS02705 WP_014634073.1 550732..552519(+) (rcrQ) [Streptococcus salivarius JIM8777]
MKNNKKKTNHSSSFGRLWSYLQAYRFPLYLAIFLKIVSVIMSVLEPVVIGLAITELTKNTLDIMKGVEGAHINVYYVGWV
LVVYLLRGLIYELAAYYSNYFMTNAVQATVQDMRNEMTEKINRTSVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVV
NAVFTLALVIGTVLYLNLQLGAIVVITIPITFFGARYIMSKSQPYFKQQADALGTLNGFVQENLTGFNVLKLFGREDRSL
DDFKEITEDLQKVGFKANFISGLMMPVLNGLSDLTYLIVAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVSFKHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=40270 SALIVA_RS02705 WP_014634073.1 550732..552519(+) (rcrQ) [Streptococcus salivarius JIM8777]
ATGAAGAATAATAAAAAGAAAACAAATCATTCCTCAAGTTTTGGCCGCCTTTGGTCCTATTTGCAGGCTTATCGTTTCCC
ACTTTACCTAGCCATTTTCCTGAAAATTGTTAGTGTTATCATGAGTGTCCTTGAGCCAGTGGTCATTGGTTTAGCTATTA
CCGAGTTAACTAAAAATACGCTGGACATCATGAAGGGTGTCGAAGGCGCTCATATTAACGTTTACTATGTTGGTTGGGTT
CTCGTTGTTTATCTCTTGCGTGGTCTTATTTATGAGTTGGCTGCCTACTATTCCAACTATTTTATGACCAATGCCGTGCA
AGCAACGGTTCAAGATATGCGAAATGAGATGACCGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGCACCAGT
TTGGGGACCTCTTAGGCCGCTTTACCAGTGACGTCGAGACAGTATCTAATGCCTTGCAACAGTCATTCTTGCAGGTTGTT
AATGCCGTCTTTACTCTAGCCTTGGTTATTGGAACAGTGCTTTACCTTAATCTTCAATTGGGAGCTATAGTTGTCATCAC
TATTCCGATTACATTCTTTGGTGCCCGCTATATCATGAGTAAGTCTCAGCCCTACTTTAAACAGCAGGCTGATGCCTTAG
GTACTCTTAATGGTTTTGTTCAAGAAAATCTGACCGGCTTCAATGTGCTTAAGCTATTTGGCCGTGAGGATAGATCCTTG
GACGACTTTAAAGAAATCACGGAAGACCTTCAGAAGGTAGGTTTTAAGGCCAATTTCATTTCAGGACTCATGATGCCGGT
TCTTAATGGTTTATCTGACTTGACCTATCTAATTGTCGCTGTTTTGGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCCTTTGTTCAGTACGTTTGGCAGATTAACCAACCCATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAAAGTGCTAAATCTTCTTTAGACCGTATTTTCCAACTGATGGATGAACCAGATGAGGCTAATGATGCTACTGAAGT
GCTAGAGGGAGATTTGACTGGCCAAGTTAGCTTTAAGCATGTGGACTTCCAGTATGTGGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCCATTGTCGGTCCTACCGGTGCCGGAAAATCAACCATTATCAAC
CTCCTCATGCGTTTCTATGATGTGACTGCTGGTTCTATTTCAGTTGATGGTCACGATATCCGTAACCTGTCACGTCAGGA
TTATCGTAAGCAGTTTGGTATGGTGCTTCAGGATGCTTGGCTTTTTGAAGGAACTATCAAGGAAAATCTTCGCTTTGGTA
ATCTTGAGGCGACTGACGAGGAAATTGTTGAAGCTGCTAAGGCGGCCAATGTGGATCACTTTATCCGTACACTACCTGGT
GGTTACAACATGGAAATGAACCAGGAATCAAGTAATATCTCACTAGGACAAAAGCAACTTTTGACCATTGCGCGTGCGCT
TTTGGCTGATCCGAAAATTTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAAG
CCATGAAAACTCTCATGCAAGGTCGAACAAGCTTTGTCATCGCTCACCGTTTATCAACTATCCAAGAAGCAGACAAGATT
TTGGTCCTTAAAGATGGTCAAATCATCGAACAAGGGAACCATGAATCCCTTCTTGCAGATAAAGGCTTCTATTACGATTT
GTATAATAGCCAGTTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(373-521)

ABC transporter transmembrane region (ABC_membrane)

(29-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.379

100

0.425