Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FOC43_RS00535 Genome accession   NZ_CP046317
Coordinates   109832..111016 (+) Length   394 a.a.
NCBI ID   WP_072221110.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_735     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 104832..116016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC43_RS00520 (FOC43_00520) cysC 105452..106036 (+) 585 WP_004283433.1 adenylyl-sulfate kinase -
  FOC43_RS08925 - 106033..107772 (+) 1740 WP_231133869.1 hypothetical protein -
  FOC43_RS00530 (FOC43_00530) - 107808..109835 (+) 2028 WP_004283437.1 capsular polysaccharide biosynthesis protein -
  FOC43_RS00535 (FOC43_00535) kpsS 109832..111016 (+) 1185 WP_072221110.1 capsule biosynthesis protein Regulator
  FOC43_RS00540 (FOC43_00540) - 111083..112204 (+) 1122 WP_004283441.1 hypothetical protein -
  FOC43_RS00545 (FOC43_00545) - 112201..113571 (+) 1371 WP_002783822.1 cytochrome P450 -
  FOC43_RS00550 (FOC43_00550) - 113568..113990 (+) 423 WP_002779166.1 hypothetical protein -
  FOC43_RS00555 (FOC43_00555) acpS 113993..114340 (-) 348 WP_002779165.1 holo-ACP synthase -
  FOC43_RS00560 (FOC43_00560) fliL 114340..114876 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46665.42 Da        Isoelectric Point: 10.0234

>NTDB_id=402605 FOC43_RS00535 WP_072221110.1 109832..111016(+) (kpsS) [Campylobacter coli strain FDAARGOS_735]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWFFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAVLQVYSDTQIKYH
YKKSIEDFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVQGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=402605 FOC43_RS00535 WP_072221110.1 109832..111016(+) (kpsS) [Campylobacter coli strain FDAARGOS_735]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAAATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGCTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGTTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTATTTTTTAGCTGTTTTGCAAGTTTATAGCGATACACAGATTAAGTATCAT
TATAAAAAAAGTATAGAAGATTTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAC
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.817

100

0.878

Multiple sequence alignment