Detailed information NTG0402601

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: FOC43_RS00260
• Genome accession: NZ_CP046317
• Coordinates: 49900..51318 (+)
• Length: 472 a.a.
• NCBI ID: WP_002779315.1
• Uniprot ID: -
• Organism: Campylobacter coli strain FDAARGOS_735
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 44900..56318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOC43_RS00245 (FOC43_00245)	-	45285..45923 (+)	639	WP_002784063.1	HAD family hydrolase	-
FOC43_RS00250 (FOC43_00250)	nifJ	46027..49587 (+)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
FOC43_RS00255 (FOC43_00255)	ctsR	49611..49922 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
FOC43_RS00260 (FOC43_00260)	ctsD	49900..51318 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
FOC43_RS00265 (FOC43_00265)	ctsP	51311..51907 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
FOC43_RS00270 (FOC43_00270)	-	51904..52500 (+)	597	WP_002779313.1	CDC27 family protein	-
FOC43_RS00275 (FOC43_00275)	ctsE	52493..54055 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
FOC43_RS00280 (FOC43_00280)	ctsF	54042..55217 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
FOC43_RS00285 (FOC43_00285)	-	55214..55978 (-)	765	WP_002781157.1	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53513.05 Da
• Isoelectric Point: 6.5150

>NTDB_id=402601 FOC43_RS00260 WP_002779315.1 49900..51318(+) (ctsD) [Campylobacter coli strain FDAARGOS_735]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=402601 FOC43_RS00260 WP_002779315.1 49900..51318(+) (ctsD) [Campylobacter coli strain FDAARGOS_735]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGTCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTACAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.72	100	0.807