Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC49_RS04580 Genome accession   NZ_CP046314
Coordinates   959598..960983 (+) Length   461 a.a.
NCBI ID   WP_004634191.1    Uniprot ID   -
Organism   Gemella morbillorum strain FDAARGOS_741     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954598..965983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC49_RS04565 (FOC49_04565) - 955138..956397 (+) 1260 WP_004634185.1 nucleobase:cation symporter-2 family protein -
  FOC49_RS04570 (FOC49_04570) - 956589..957116 (+) 528 WP_004634187.1 CtsR family transcriptional regulator -
  FOC49_RS04575 (FOC49_04575) - 957121..959595 (+) 2475 WP_004634189.1 ATP-dependent Clp protease ATP-binding subunit -
  FOC49_RS04580 (FOC49_04580) radA 959598..960983 (+) 1386 WP_004634191.1 DNA repair protein RadA Machinery gene
  FOC49_RS04585 (FOC49_04585) - 961264..962352 (+) 1089 WP_004634193.1 PIN/TRAM domain-containing protein -
  FOC49_RS04590 (FOC49_04590) secG 962432..962662 (+) 231 WP_004634195.1 preprotein translocase subunit SecG -
  FOC49_RS04595 (FOC49_04595) rnr 962743..964869 (+) 2127 WP_004634198.1 ribonuclease R -
  FOC49_RS04600 (FOC49_04600) smpB 964882..965346 (+) 465 WP_004634199.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50917.80 Da        Isoelectric Point: 8.1262

>NTDB_id=402577 FOC49_RS04580 WP_004634191.1 959598..960983(+) (radA) [Gemella morbillorum strain FDAARGOS_741]
MAKVNVKYECNACGYQSLKYMGRCPSCKKWASMEEVVETPQKKTKYTAFIPTSSDTERLEAGKLKSVSTQDVPRTLTDSQ
ELNRVLGGGVVGGSLVLLGGDPGIGKSTLLLQISAYLAKEHDVLYVTGEESVRQVKIRADRLKNNTDELYVYAQTDLNLI
YEVVKKVKPKFLVIDSIQTIYNPNLENSPGSITQVRECTQQLMKVAKSLNIAIFIVGHVTKEGTIAGPRMLEHMVDTVLY
FEGEGQHSYRMLRAVKNRFGSTNEIGIFEMKSSGLEDLANPSQMFLEERSKNLAGATIISTMEGSRALLVEIQSLTTPTA
FNNPRRVSSGLEYNKLILLMAVLEKKVGYLLQQQDVYVKVSGGVRIDDPAVDLGVIVAVASSFKDIAVDMNDCFIGEVGL
TGEVRRVSRIEQRISEAKKHGFKRVIVPAGNMKNTEFPPGIEIIPVKDIRECLDVAFGSVF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=402577 FOC49_RS04580 WP_004634191.1 959598..960983(+) (radA) [Gemella morbillorum strain FDAARGOS_741]
ATGGCGAAAGTAAATGTGAAATATGAATGTAATGCCTGCGGTTATCAAAGCTTAAAATATATGGGGAGATGCCCAAGTTG
TAAAAAATGGGCATCAATGGAAGAAGTGGTAGAAACTCCACAAAAAAAGACAAAATATACTGCATTTATTCCAACAAGTA
GTGATACAGAACGTTTAGAGGCTGGAAAACTAAAATCAGTGTCTACTCAAGATGTTCCGAGAACTCTAACAGATAGTCAA
GAACTAAATAGAGTTCTTGGTGGTGGGGTTGTTGGAGGTTCACTAGTTCTTTTAGGAGGAGATCCAGGGATTGGTAAATC
AACGCTATTATTACAAATATCAGCATATTTAGCGAAAGAACATGATGTTCTTTATGTTACTGGGGAAGAATCGGTAAGAC
AAGTCAAAATCCGCGCAGATAGATTGAAAAATAATACAGATGAACTTTATGTTTATGCTCAAACAGATTTGAATTTAATA
TATGAAGTAGTAAAAAAAGTTAAGCCTAAATTCTTGGTAATTGACTCAATACAAACTATATATAATCCAAATTTAGAAAA
TTCACCAGGAAGTATTACTCAAGTTCGAGAATGTACTCAGCAACTTATGAAGGTTGCAAAGAGTTTAAATATTGCCATAT
TCATAGTGGGACATGTAACTAAAGAAGGAACAATAGCGGGACCTCGTATGCTTGAACATATGGTTGATACAGTCCTATAC
TTTGAAGGAGAAGGTCAACATAGTTACCGAATGCTTCGAGCGGTGAAAAATCGTTTTGGATCTACGAATGAAATAGGAAT
TTTTGAAATGAAATCTAGTGGATTAGAAGATTTAGCCAATCCTTCACAGATGTTCCTAGAGGAAAGAAGTAAAAATTTAG
CTGGTGCTACTATAATAAGTACAATGGAAGGTAGTAGAGCATTATTGGTAGAAATCCAATCTTTAACAACTCCAACAGCT
TTTAATAATCCTCGTCGTGTATCATCAGGTCTAGAATATAATAAGTTGATTTTACTTATGGCTGTTCTTGAGAAAAAAGT
AGGATATTTGTTGCAACAACAAGATGTTTATGTAAAGGTATCAGGTGGAGTTAGAATAGATGACCCTGCGGTTGACCTTG
GTGTAATTGTTGCTGTTGCTTCGAGTTTTAAAGATATAGCAGTTGATATGAATGACTGTTTTATTGGAGAGGTAGGATTG
ACAGGAGAAGTTCGACGTGTTAGTCGTATTGAGCAAAGAATAAGTGAAGCAAAAAAACATGGTTTTAAACGTGTGATTGT
TCCAGCTGGGAATATGAAAAATACGGAATTCCCACCAGGAATAGAAATTATACCAGTAAAAGATATTAGAGAATGCTTAG
ATGTAGCATTTGGAAGTGTATTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(76-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.209

99.566

0.56
  radA Streptococcus pneumoniae Rx1

55.361

99.132

0.549
  radA Streptococcus pneumoniae D39

55.361

99.132

0.549
  radA Streptococcus pneumoniae R6

55.361

99.132

0.549
  radA Streptococcus pneumoniae TIGR4

55.361

99.132

0.549
  radA Streptococcus mitis NCTC 12261

55.361

99.132

0.549
  radA Streptococcus mitis SK321

55.361

99.132

0.549

Multiple sequence alignment