Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HUZ76_RS09385 Genome accession   NZ_CP055022
Coordinates   1984188..1985615 (-) Length   475 a.a.
NCBI ID   WP_072664921.1    Uniprot ID   -
Organism   Escherichia coli strain SWHEFF_68     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1979188..1990615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ76_RS09350 (HUZ76_09285) hisL 1979772..1979822 (-) 51 WP_001364200.1 his operon leader peptide -
  HUZ76_RS09355 (HUZ76_09290) yefM 1980105..1980356 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HUZ76_RS09360 (HUZ76_09295) yoeB 1980353..1980607 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HUZ76_RS09365 (HUZ76_09300) yeeZ 1980690..1981514 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HUZ76_RS09370 (HUZ76_09305) yeeY 1981560..1982489 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  HUZ76_RS09375 (HUZ76_09310) yoeI 1982704..1982766 (+) 63 WP_010723108.1 membrane protein YoeI -
  HUZ76_RS09380 (HUZ76_09315) plaP 1982756..1984114 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HUZ76_RS09385 (HUZ76_09320) sbcB 1984188..1985615 (-) 1428 WP_072664921.1 exodeoxyribonuclease I Machinery gene
  HUZ76_RS09390 (HUZ76_09325) dacD 1985824..1986990 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HUZ76_RS09395 (HUZ76_09330) sbmC 1987109..1987582 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HUZ76_RS09400 (HUZ76_09335) yeeA 1987780..1988838 (+) 1059 WP_001200890.1 FUSC family protein -
  HUZ76_RS09405 (HUZ76_09340) tmaR 1989010..1989339 (+) 330 WP_000450409.1 DUF496 family protein -
  HUZ76_RS09410 (HUZ76_09345) - 1989440..1989883 (-) 444 WP_063815002.1 EutP/PduV family microcompartment system protein -
  HUZ76_RS09415 (HUZ76_09350) pduU 1989888..1990238 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54467.65 Da        Isoelectric Point: 5.2416

>NTDB_id=402569 HUZ76_RS09385 WP_072664921.1 1984188..1985615(-) (sbcB) [Escherichia coli strain SWHEFF_68]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=402569 HUZ76_RS09385 WP_072664921.1 1984188..1985615(-) (sbcB) [Escherichia coli strain SWHEFF_68]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAGCTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGTCCGGAAGACGCT
GAGCGTTTAGGGATTGATCGTCAACATTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

98.947

0.587