Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC50_RS01400 Genome accession   NZ_CP046313
Coordinates   285666..287048 (-) Length   460 a.a.
NCBI ID   WP_006364461.1    Uniprot ID   -
Organism   Gemella sanguinis strain FDAARGOS_742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280666..292048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC50_RS01380 (FOC50_01380) smpB 281263..281727 (-) 465 WP_006364457.1 SsrA-binding protein SmpB -
  FOC50_RS01385 (FOC50_01385) rnr 281740..283866 (-) 2127 WP_006364458.1 ribonuclease R -
  FOC50_RS01390 (FOC50_01390) secG 284029..284259 (-) 231 WP_006364459.1 preprotein translocase subunit SecG -
  FOC50_RS01395 (FOC50_01395) - 284337..285425 (-) 1089 WP_006364460.1 PIN/TRAM domain-containing protein -
  FOC50_RS01400 (FOC50_01400) radA 285666..287048 (-) 1383 WP_006364461.1 DNA repair protein RadA Machinery gene
  FOC50_RS01405 (FOC50_01405) - 287051..289525 (-) 2475 WP_006364462.1 ATP-dependent Clp protease ATP-binding subunit -
  FOC50_RS01410 (FOC50_01410) - 289530..290048 (-) 519 WP_006364463.1 CtsR family transcriptional regulator -
  FOC50_RS01415 (FOC50_01415) - 290215..291477 (-) 1263 WP_006364464.1 nucleobase:cation symporter-2 family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50834.68 Da        Isoelectric Point: 8.1332

>NTDB_id=402557 FOC50_RS01400 WP_006364461.1 285666..287048(-) (radA) [Gemella sanguinis strain FDAARGOS_742]
MAKVNVKYECNACGYQSLKYMGRCPNCKKWASMEEVLEAKKATKHTSFEATTNDAERVEAGKLKAVSTQDVPRTLTDSSE
LNRVLGGGVVGGSLVLLGGDPGIGKSTLLLQISAYLAKEHDVLYVTGEESVRQVKIRADRLKNNTDELYVYAQTDLNLIY
QVVKKIKPKFLVIDSIQTIYNPNLENSPGSITQVRECTQQLMKIAKSLNIAIFIVGHVTKEGTIAGPRMLEHMVDTVLYF
EGENQHSYRMLRAVKNRFGSTNEIGIFEMKTSGLEDLANPSQMFLEERSKNLAGATIISTMEGSRPLLVEIQSLTTPTAF
NNPRRISTGLEYNKLILLMAVLEKKAGYLLQQQDVYVKVSGGVKIDDPAVDLGVVVAVASSFKDVAVDMNDCFIGEVGLT
GEVRRVSRIEQRINEAKKHGFKRVIVPVGNMKNSEFPSGIEIIPVKDIRECLDIAFGNVF

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=402557 FOC50_RS01400 WP_006364461.1 285666..287048(-) (radA) [Gemella sanguinis strain FDAARGOS_742]
ATGGCGAAAGTTAATGTGAAATATGAATGTAATGCATGTGGTTATCAAAGTTTAAAATACATGGGAAGATGTCCAAATTG
TAAAAAATGGGCATCGATGGAAGAAGTTCTAGAAGCAAAAAAAGCAACAAAGCATACTAGTTTTGAAGCGACAACAAATG
ATGCAGAACGTGTAGAGGCAGGCAAATTAAAAGCTGTCTCTACACAAGATGTACCTAGAACACTTACAGATAGCAGTGAA
CTAAATAGAGTTTTAGGTGGAGGAGTAGTAGGAGGATCATTAGTGCTCCTTGGTGGTGACCCTGGGATAGGGAAATCTAC
ACTTCTATTACAAATTTCAGCATATTTAGCAAAAGAACATGATGTTCTATATGTTACAGGGGAAGAGTCTGTAAGACAAG
TTAAAATAAGAGCAGATAGATTAAAAAATAATACTGATGAGCTTTATGTTTATGCTCAAACTGATTTGAACTTGATCTAT
CAAGTAGTAAAAAAAATAAAACCAAAGTTTTTAGTTATTGACTCTATACAGACCATCTATAATCCTAATTTAGAAAATTC
TCCTGGCAGTATTACTCAAGTAAGAGAATGCACTCAACAACTTATGAAAATAGCAAAAAGCTTAAATATTGCTATTTTTA
TAGTAGGACATGTTACAAAAGAAGGTACAATAGCAGGACCTCGTATGCTAGAGCATATGGTTGACACCGTGTTATACTTT
GAAGGAGAAAATCAACATAGCTATAGAATGTTAAGAGCGGTAAAAAATCGTTTTGGTTCTACTAATGAAATAGGTATTTT
TGAAATGAAAACTAGTGGATTAGAAGACCTAGCTAATCCATCACAAATGTTTTTAGAAGAGCGAAGTAAAAATCTTGCAG
GTGCTACTATTATAAGTACAATGGAAGGAAGTCGACCATTATTAGTAGAGATTCAATCATTAACTACACCTACAGCTTTT
AATAATCCTCGTAGAATATCTACAGGGTTAGAGTATAACAAATTAATTTTACTTATGGCTGTTTTAGAAAAAAAAGCAGG
ATATTTATTACAACAACAAGATGTATACGTTAAAGTATCTGGTGGGGTGAAAATAGATGACCCAGCAGTAGATTTAGGTG
TAGTAGTTGCGGTAGCATCTAGCTTTAAAGATGTAGCGGTTGATATGAATGATTGCTTTATCGGAGAAGTAGGTCTAACT
GGTGAAGTAAGAAGAGTTAGTCGTATAGAACAAAGAATAAATGAAGCGAAAAAACATGGATTTAAAAGGGTTATTGTTCC
AGTTGGGAATATGAAAAATTCAGAATTCCCATCAGGCATAGAAATAATACCTGTAAAAGATATAAGAGAGTGTCTAGATA
TAGCATTTGGCAATGTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.863

99.783

0.567
  radA Streptococcus pneumoniae Rx1

56.579

99.13

0.561
  radA Streptococcus pneumoniae D39

56.579

99.13

0.561
  radA Streptococcus pneumoniae R6

56.579

99.13

0.561
  radA Streptococcus pneumoniae TIGR4

56.579

99.13

0.561
  radA Streptococcus mitis NCTC 12261

56.579

99.13

0.561
  radA Streptococcus mitis SK321

56.579

99.13

0.561

Multiple sequence alignment