Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   ARCVE_RS08240 Genome accession   NC_015320
Coordinates   1489290..1490858 (-) Length   522 a.a.
NCBI ID   WP_013684315.1    Uniprot ID   -
Organism   Archaeoglobus veneficus SNP6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484290..1495858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARCVE_RS08215 (Arcve_1654) - 1484799..1485350 (+) 552 WP_013684310.1 HDIG domain-containing metalloprotein -
  ARCVE_RS08220 (Arcve_1655) - 1485325..1486767 (-) 1443 WP_013684311.1 dihydropteroate synthase-like protein -
  ARCVE_RS08225 (Arcve_1656) - 1486839..1487489 (+) 651 WP_013684312.1 PHP domain-containing protein -
  ARCVE_RS08230 (Arcve_1657) - 1487494..1488219 (+) 726 WP_013684313.1 RAD55 family ATPase -
  ARCVE_RS08235 (Arcve_1658) - 1488193..1489230 (-) 1038 WP_013684314.1 tRNA (guanine-N1-)-methyltransferase -
  ARCVE_RS08240 (Arcve_1659) epdL 1489290..1490858 (-) 1569 WP_013684315.1 type II/IV secretion system ATPase subunit Machinery gene
  ARCVE_RS08245 (Arcve_1660) - 1490941..1491186 (-) 246 WP_013684316.1 amphi-Trp domain-containing protein -
  ARCVE_RS08250 (Arcve_1661) - 1491238..1491885 (+) 648 WP_013684317.1 endonuclease V -
  ARCVE_RS08255 (Arcve_1662) - 1491882..1492460 (-) 579 WP_013684318.1 metal-dependent transcriptional regulator -
  ARCVE_RS08260 (Arcve_1663) - 1492501..1493085 (-) 585 WP_013684319.1 dienelactone hydrolase family protein -
  ARCVE_RS08265 (Arcve_1664) - 1493128..1494075 (-) 948 WP_013684320.1 thioredoxin family protein -
  ARCVE_RS08270 (Arcve_1665) - 1494081..1494749 (-) 669 WP_013684321.1 tetratricopeptide repeat protein -
  ARCVE_RS08275 (Arcve_1666) - 1494875..1495186 (+) 312 WP_013684322.1 winged helix-turn-helix transcriptional regulator -
  ARCVE_RS08280 (Arcve_1667) - 1495191..1495667 (-) 477 WP_156786043.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 60446.51 Da        Isoelectric Point: 6.1688

>NTDB_id=40251 ARCVE_RS08240 WP_013684315.1 1489290..1490858(-) (epdL) [Archaeoglobus veneficus SNP6]
MRLKLKFREEAAPQAEVSFEELAKELEKDFQPPEGWVQLESYPVYGKYVFSSVHILAKEEEDDLLYFLREPPLNDEERLV
VNDLLSKLHYLPVTPDEMRVKSKAEVLREKMDGVLRDFRIKLDEKSYYRVFYYLLRDTIFYGPITPLMYDPMIEDISCNG
YEKPIYIFHRSYANLRTNITFQSDELDRFVIKLAQQCGKHISIAEPMVDATMPDGSRIQMTLGKEVTDHGSTFTIRKFRQ
EPLTPINLIKWGTFSAEQMAYLWLCIENKKSLIFAGGTASGKTTSTNAVALFIPRKAKIVTIEDTRELMLPHKNWIPAVT
REAFQAEARSIDMYDLLRAALRQRPEYIIVGEVRGKEALTLFQAMSTGHTTYSTLHADSVNGVIHRLENPPINVPRPMIE
ALDIVSIQAQTYVNDKRVRRNTEIAEIVGLDPHTKMLRTTTVFQWDSVKDEHVMVGASKALEDIRKNRGWSVRELQEELE
RRRQILEYMAENNIMAFKDVANVIYTYQADPDRAMRILGILE

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=40251 ARCVE_RS08240 WP_013684315.1 1489290..1490858(-) (epdL) [Archaeoglobus veneficus SNP6]
ATGAGATTAAAGCTAAAGTTCAGAGAAGAGGCGGCACCTCAGGCGGAGGTTAGCTTTGAAGAGCTTGCAAAAGAGCTTGA
GAAAGACTTTCAGCCTCCTGAGGGATGGGTTCAGCTTGAGAGTTATCCCGTTTATGGGAAGTATGTCTTCTCGAGTGTAC
ACATTCTCGCAAAAGAAGAAGAGGACGACCTGCTCTACTTCCTGAGAGAGCCCCCGCTGAATGATGAAGAAAGACTCGTT
GTAAACGATCTTCTCTCGAAGCTTCACTACCTCCCGGTAACTCCGGATGAGATGAGAGTTAAGTCAAAGGCTGAGGTTCT
AAGGGAGAAGATGGATGGTGTCCTGAGAGACTTCAGAATAAAACTGGATGAGAAAAGCTATTACAGGGTCTTCTACTATC
TGCTTAGAGACACGATCTTTTACGGCCCGATAACACCTCTGATGTACGATCCGATGATTGAGGATATATCCTGTAACGGC
TATGAGAAGCCTATCTACATTTTCCACAGAAGTTACGCGAACCTGAGAACGAACATAACCTTTCAGAGCGATGAACTCGA
CAGATTTGTGATAAAACTCGCTCAGCAGTGCGGAAAGCACATAAGCATTGCAGAGCCAATGGTTGATGCGACAATGCCGG
ATGGCAGCAGAATTCAGATGACCCTTGGAAAGGAGGTCACAGACCACGGTTCAACGTTCACAATCAGAAAGTTCAGACAG
GAACCTCTCACTCCCATAAATCTCATAAAATGGGGTACTTTCTCAGCGGAGCAGATGGCGTACCTCTGGCTCTGTATAGA
GAACAAGAAGAGCCTGATTTTTGCTGGAGGCACTGCAAGCGGTAAAACAACCTCAACAAATGCTGTTGCCCTCTTCATTC
CGAGAAAGGCCAAAATAGTAACCATCGAAGATACAAGAGAACTCATGCTTCCACACAAGAACTGGATTCCCGCCGTTACG
AGAGAGGCTTTTCAGGCTGAGGCGCGCTCCATAGACATGTACGACTTGCTGCGAGCAGCACTCAGGCAGAGACCTGAATA
CATAATAGTCGGTGAGGTCAGGGGCAAAGAAGCCCTAACTCTCTTCCAGGCCATGTCAACAGGTCACACCACGTACTCAA
CCCTACACGCCGACTCAGTTAACGGAGTCATACACCGTCTCGAAAACCCACCCATAAACGTCCCCCGCCCGATGATTGAA
GCCCTCGACATAGTGAGTATTCAGGCTCAGACGTACGTCAACGATAAAAGAGTCAGGAGAAATACAGAGATTGCGGAAAT
AGTCGGACTTGATCCGCATACAAAGATGTTGAGAACCACGACGGTGTTTCAGTGGGACAGCGTAAAGGACGAACACGTGA
TGGTTGGTGCGTCGAAGGCTCTGGAAGACATCAGGAAGAATAGGGGATGGAGTGTCAGGGAGCTGCAGGAGGAGCTGGAG
AGGAGACGGCAAATTCTCGAATACATGGCGGAAAACAACATAATGGCCTTCAAAGACGTTGCTAACGTTATATATACGTA
TCAGGCGGATCCGGATAGGGCTATGAGAATCCTGGGGATTTTGGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(150-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

51.633

93.87

0.485

Multiple sequence alignment