Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FOC36_RS05250 Genome accession   NZ_CP046307
Coordinates   1102632..1104302 (-) Length   556 a.a.
NCBI ID   WP_003126213.1    Uniprot ID   A0A6I4XHK9
Organism   Enterococcus gallinarum strain FDAARGOS_728     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097632..1109302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC36_RS05225 (FOC36_05225) pstB 1097773..1098579 (-) 807 WP_003126219.1 phosphate ABC transporter ATP-binding protein PstB -
  FOC36_RS05230 (FOC36_05230) pstA 1098593..1099477 (-) 885 WP_003126218.1 phosphate ABC transporter permease PstA -
  FOC36_RS05235 (FOC36_05235) pstC 1099477..1100397 (-) 921 WP_003126217.1 phosphate ABC transporter permease subunit PstC -
  FOC36_RS05240 (FOC36_05240) - 1100516..1101370 (-) 855 WP_003126216.1 phosphate ABC transporter substrate-binding protein PstS -
  FOC36_RS05245 (FOC36_05245) - 1101781..1102509 (-) 729 WP_003126214.1 alpha/beta hydrolase -
  FOC36_RS05250 (FOC36_05250) recN 1102632..1104302 (-) 1671 WP_003126213.1 DNA repair protein RecN Machinery gene
  FOC36_RS05255 (FOC36_05255) argR 1104315..1104764 (-) 450 WP_003126212.1 arginine repressor -
  FOC36_RS05260 (FOC36_05260) - 1104858..1105688 (-) 831 WP_003126211.1 TlyA family RNA methyltransferase -
  FOC36_RS05265 (FOC36_05265) - 1105688..1106572 (-) 885 WP_003126210.1 polyprenyl synthetase family protein -
  FOC36_RS05270 (FOC36_05270) - 1106581..1106799 (-) 219 WP_003126209.1 exodeoxyribonuclease VII small subunit -
  FOC36_RS05275 (FOC36_05275) xseA 1106780..1108132 (-) 1353 WP_003126207.1 exodeoxyribonuclease VII large subunit -
  FOC36_RS05280 (FOC36_05280) - 1108134..1108985 (-) 852 WP_005471160.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62859.85 Da        Isoelectric Point: 4.4477

>NTDB_id=402506 FOC36_RS05250 WP_003126213.1 1102632..1104302(-) (recN) [Enterococcus gallinarum strain FDAARGOS_728]
MLLELTIQNFAIISHLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSTDYLRQGAEKCRLEGLFEWPQQSEFQELT
EELGIDQEDVLIVQRDITQAGKTICRVNGRTVTLANLRKIGLFLVDIQGQNEHQELLQPERHLSLVDGFGDDGFKEELLH
YQDAYQEYRNLEKQVRNIQENEQLYVQRMDMLRFQQEEIAQAELIEGEEENLIEEREKLTNYQKIVDALGQSYGALSSEE
MSSVDGVSVALSEIQSIAHLDQAYEKITETIQSAYYLLQDAASDISRQLDNLELDEGRLEEVINRLETIRQLKRKYGESI
SVILAYYEEISKEISESAYTEGQLEQLEEQLTAKADAVWALAEQLHVKRREIAHRLEKEIVQELNDLYMEHAQFEVRFAN
GKQLTATGFDSVAFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKISKI
ALNSQVLCITHLPQVAAVADYQYFIEKAIQEGRTETRVRQLSYEERVTEIARMLSGAEITELTVEHARELLALAHQ

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=402506 FOC36_RS05250 WP_003126213.1 1102632..1104302(-) (recN) [Enterococcus gallinarum strain FDAARGOS_728]
ATGCTTTTAGAGTTGACCATTCAAAATTTCGCAATTATTTCCCACTTACACCTTTCTTTTCATGAAGGAATGACAGCTTT
GACAGGTGAAACAGGTGCCGGGAAATCAATCATTATTGATGCGATGGGCTTGTTAGCCGGCGGACGCGGATCTACTGACT
ACTTGCGTCAAGGAGCAGAGAAATGCCGACTGGAAGGCCTTTTTGAATGGCCGCAGCAGTCTGAGTTTCAAGAACTGACA
GAAGAATTAGGCATTGATCAAGAAGATGTGCTGATCGTCCAACGGGATATCACACAAGCAGGAAAAACAATCTGTCGTGT
CAATGGACGTACGGTCACCTTGGCAAATCTGCGAAAGATTGGTCTTTTTTTAGTTGATATTCAAGGACAAAACGAACATC
AAGAGTTATTACAGCCGGAAAGGCATCTTAGCTTGGTAGATGGGTTTGGCGATGATGGTTTCAAAGAAGAACTGCTGCAC
TATCAGGATGCCTATCAGGAATACCGCAATTTAGAAAAACAGGTTCGCAATATTCAGGAAAATGAACAATTATATGTTCA
ACGGATGGATATGCTGCGATTCCAACAAGAAGAAATCGCACAGGCTGAATTAATCGAGGGCGAAGAAGAAAATCTGATCG
AAGAACGTGAGAAGTTAACCAACTATCAGAAAATCGTCGATGCACTGGGGCAAAGTTATGGTGCGCTCTCTTCAGAAGAA
ATGAGCAGTGTCGACGGTGTGAGTGTGGCACTGTCCGAGATCCAATCTATCGCCCACTTAGATCAAGCCTATGAAAAAAT
CACTGAAACGATCCAGAGCGCTTATTATTTGTTGCAGGATGCTGCTTCTGATATTTCACGACAATTAGATAACCTTGAAC
TTGATGAAGGACGTCTAGAAGAAGTTATCAACCGACTGGAAACGATTCGTCAATTGAAGCGCAAATATGGCGAGTCCATC
TCCGTCATCCTAGCTTATTATGAAGAAATTAGTAAGGAGATCTCTGAATCTGCCTATACTGAAGGCCAGCTGGAACAGTT
AGAAGAGCAATTGACAGCTAAGGCCGATGCTGTTTGGGCTCTTGCTGAACAACTCCATGTCAAGCGGCGAGAAATCGCAC
ATCGATTAGAAAAAGAAATTGTGCAAGAATTGAACGACCTCTATATGGAACATGCACAGTTTGAAGTTCGCTTTGCAAAT
GGCAAGCAGTTGACAGCTACTGGATTTGATAGTGTGGCTTTTTATCTCACGACCAATCCTGGGGAAGGCATGAAGCCGTT
GGTTCGGGTAGCATCTGGGGGTGAGCTGTCTCGTATCTTATTAGCATTGAAATCGATTTTTTCACGGAAACAAGGGATCA
CGAGTATTGTTTTTGACGAAGTAGATACCGGAGTCAGTGGCCGCGTGGCGCAAGCAATTGCTGAAAAGATCTCAAAAATT
GCGTTGAATTCCCAAGTATTGTGTATCACTCATTTGCCGCAAGTAGCCGCAGTAGCTGATTATCAATATTTTATTGAAAA
AGCGATCCAAGAAGGACGGACGGAGACTCGAGTTCGTCAGTTATCCTATGAAGAACGAGTGACTGAGATTGCTCGTATGT
TATCAGGAGCAGAAATCACAGAACTGACAGTAGAGCATGCGCGTGAATTGTTAGCCTTGGCTCATCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4XHK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.203

100

0.486

Multiple sequence alignment