Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FOC36_RS01915 Genome accession   NZ_CP046307
Coordinates   393177..394994 (+) Length   605 a.a.
NCBI ID   WP_005472346.1    Uniprot ID   -
Organism   Enterococcus gallinarum strain FDAARGOS_728     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 388177..399994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC36_RS01895 (FOC36_01895) - 388436..390151 (+) 1716 WP_005472341.1 ABC transporter ATP-binding protein -
  FOC36_RS01900 (FOC36_01900) spxA 390829..391227 (+) 399 WP_003127030.1 transcriptional regulator SpxA -
  FOC36_RS01905 (FOC36_01905) - 391382..392032 (+) 651 WP_003127031.1 adaptor protein MecA -
  FOC36_RS01910 (FOC36_01910) - 392115..393110 (+) 996 WP_003127032.1 competence protein CoiA -
  FOC36_RS01915 (FOC36_01915) pepF 393177..394994 (+) 1818 WP_005472346.1 oligoendopeptidase F Regulator
  FOC36_RS01920 (FOC36_01920) - 395244..395429 (+) 186 WP_005472348.1 hypothetical protein -
  FOC36_RS01925 (FOC36_01925) - 395534..396190 (-) 657 WP_003127036.1 DsbA family protein -
  FOC36_RS01930 (FOC36_01930) - 396279..396872 (-) 594 WP_003127037.1 CYTH domain-containing protein -
  FOC36_RS01935 (FOC36_01935) - 397068..397721 (+) 654 WP_003127038.1 GTP pyrophosphokinase family protein -
  FOC36_RS01940 (FOC36_01940) - 397727..398524 (+) 798 WP_029486937.1 NAD kinase -
  FOC36_RS01945 (FOC36_01945) - 398530..399429 (+) 900 WP_003127040.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68792.28 Da        Isoelectric Point: 4.6378

>NTDB_id=402499 FOC36_RS01915 WP_005472346.1 393177..394994(+) (pepF) [Enterococcus gallinarum strain FDAARGOS_728]
MSETKQLPDRADLPEALTWDLTKIYADDGAFEEAFQEIVAELKQADDFKGTLSQGPAAFKEALEYVLAISRKLEKLYVYS
HLKNDQDTANTTYQGLYAKASNLVAQVSEAIAWFDPELLSMDDATIWGYFDQEPELAIYRHLIEKTVNNRPHVLPAEQEA
LLAGAGEIFGASGNIFSVLNNADLEFPIVEDENGEKVQLSHGVYGQLMENTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARHYESARQAALSANHIPESVYDTLVAVVNEHLPLLHRYMELRKRLLAVDTLHMYDVYTPILGEAPIRYS
YEEAVAKAKDALKPLGEEYLAVVNEAFENRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYVYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSDSYGELNAKYYGPSVEKDPEISLEWSRIPHFYYNYYVYQYATGFSAASALAKKILTGEPDALTKYLTYLKAG
NSDYPIEVMKKAGVDMTKADYIKDAMKVFEQRLDELEALVKELEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=402499 FOC36_RS01915 WP_005472346.1 393177..394994(+) (pepF) [Enterococcus gallinarum strain FDAARGOS_728]
ATGTCAGAAACAAAACAATTACCAGATCGTGCGGATCTACCGGAAGCATTAACATGGGACCTTACAAAGATCTATGCCGA
TGATGGGGCATTTGAAGAAGCGTTCCAAGAGATCGTGGCTGAGTTGAAGCAGGCTGATGATTTCAAAGGGACATTATCAC
AAGGACCAGCAGCTTTCAAGGAAGCATTAGAATATGTGTTAGCGATCTCCCGTAAACTGGAAAAACTCTATGTATACAGT
CATCTGAAAAATGATCAAGATACAGCCAACACAACCTATCAAGGGCTTTATGCAAAAGCCAGCAACCTTGTTGCTCAAGT
AAGTGAGGCGATTGCCTGGTTTGATCCTGAATTGCTTTCAATGGATGATGCAACTATTTGGGGTTATTTCGACCAAGAGC
CGGAATTGGCCATTTACCGCCATCTTATTGAAAAAACTGTCAATAACCGTCCCCATGTTTTGCCGGCTGAACAAGAAGCT
TTACTAGCAGGTGCAGGAGAAATATTCGGCGCTTCTGGAAATATTTTTTCAGTATTAAACAATGCCGATTTAGAATTTCC
GATCGTTGAAGATGAGAATGGAGAGAAAGTTCAATTATCTCATGGTGTTTATGGTCAATTGATGGAAAATACCGACCGTT
CCGTACGGGAAGCTGCCTTTAAAGGGTTGTATGGTGTCTATGAGCAGTTCCGTAATACATTTGCCCAAACATTAAGTACC
AATATCAAAGCCCATAACTTTAAAGCTAAAGCACGCCACTATGAGTCTGCTCGACAAGCTGCATTAAGTGCCAACCACAT
CCCGGAAAGTGTCTATGACACCTTGGTAGCTGTCGTGAATGAACATTTGCCGCTGCTGCATCGTTACATGGAGTTAAGAA
AACGCTTATTGGCTGTTGATACTTTGCATATGTATGATGTCTATACACCAATTCTAGGGGAAGCTCCGATTCGCTATAGC
TATGAAGAAGCTGTCGCAAAAGCCAAAGATGCTTTAAAACCTCTAGGTGAAGAATATTTAGCCGTGGTAAACGAAGCGTT
TGAAAATCGCTGGATCGATGTTGTCGAAAATAAAGGCAAACGCAGTGGCGCCTATTCATCTGGCGCGTACGACACATTAC
CCTATATTTTGATGAACTGGAATGATCGTTTGGATCAATTGTTCACATTGGTGCATGAGATGGGTCACAGTGTTCACAGT
TATTTTACTCGCAACAATCAACCTTATGTTTATGGCGATTATTCTATTTTCTTGGCGGAAATTGCTTCAACAACTAACGA
GAACATCTTGACAGAATACATGTTGCAAACTGAAACTGATCCTCGCGTAAAAGCCTATGTCTTGAATCATTTTCTGGATG
GATTTAAAGGAACGATTTTCCGTCAGACACAATTTGCTGAGTTTGAACACTTTATGCACGTAGAAGATGCCAAAGGAACG
CCATTGACTAGTGAATTTTTGAGTGACAGCTATGGTGAGCTGAATGCTAAATACTACGGTCCTTCTGTAGAAAAAGATCC
TGAGATCAGTCTAGAGTGGTCACGTATCCCGCATTTTTACTACAATTACTATGTCTATCAATACGCAACAGGCTTTTCGG
CAGCTTCTGCACTAGCTAAGAAAATTTTAACAGGAGAGCCTGATGCCTTAACGAAATATTTGACCTATCTAAAAGCAGGC
AACAGCGATTATCCAATTGAAGTGATGAAAAAAGCTGGAGTTGATATGACTAAAGCAGATTATATCAAAGACGCGATGAA
AGTCTTTGAACAACGGTTGGATGAATTGGAAGCATTAGTCAAGGAATTAGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.397

98.182

0.554

Multiple sequence alignment