Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FOC54_RS09125 Genome accession   NZ_CP046306
Coordinates   1790824..1791540 (-) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_746     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785824..1796540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC54_RS09105 (FOC54_09105) - 1786493..1786717 (+) 225 WP_002448268.1 sulfurtransferase TusA family protein -
  FOC54_RS09110 (FOC54_09110) - 1786828..1788071 (+) 1244 Protein_1749 ammonium transporter -
  FOC54_RS12175 - 1788177..1788244 (+) 68 Protein_1750 LacI family DNA-binding transcriptional regulator -
  FOC54_RS09115 (FOC54_09115) - 1788326..1789813 (+) 1488 WP_155975509.1 sucrose-6-phosphate hydrolase -
  FOC54_RS09120 (FOC54_09120) - 1789814..1790773 (+) 960 WP_155975510.1 carbohydrate kinase family protein -
  FOC54_RS09125 (FOC54_09125) agrA 1790824..1791540 (-) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  FOC54_RS09130 (FOC54_09130) agrC 1791553..1792842 (-) 1290 WP_155975511.1 quorum-sensing sensor histidine kinase AgrC -
  FOC54_RS09135 (FOC54_09135) agrD 1792875..1793015 (-) 141 WP_049413902.1 cyclic lactone autoinducer peptide AgrD -
  FOC54_RS09140 (FOC54_09140) - 1793018..1793584 (-) 567 WP_155975512.1 accessory gene regulator AgrB -
  FOC54_RS09145 (FOC54_09145) - 1794286..1795071 (-) 786 WP_155975513.1 carbon-nitrogen family hydrolase -
  FOC54_RS09150 (FOC54_09150) - 1795202..1795825 (-) 624 WP_155975514.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=402480 FOC54_RS09125 WP_002455088.1 1790824..1791540(-) (agrA) [Staphylococcus hominis strain FDAARGOS_746]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=402480 FOC54_RS09125 WP_002455088.1 1790824..1791540(-) (agrA) [Staphylococcus hominis strain FDAARGOS_746]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAACAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTGGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGAAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTTAAAACACGAATAATAGATTGTATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGCAATGTTGAAACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCGCATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGCTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGTCATAATATCGATTCAGTTG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874

Multiple sequence alignment