Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   ARCVE_RS06190 Genome accession   NC_015320
Coordinates   1094235..1095905 (+) Length   556 a.a.
NCBI ID   WP_013683909.1    Uniprot ID   F2KMX1
Organism   Archaeoglobus veneficus SNP6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089235..1100905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARCVE_RS06155 (Arcve_1235) purF 1089945..1091312 (-) 1368 WP_013683904.1 amidophosphoribosyltransferase -
  ARCVE_RS06160 (Arcve_1236) - 1091328..1091507 (-) 180 WP_013683905.1 50S ribosomal protein L37e -
  ARCVE_RS06165 (Arcve_1237) - 1091518..1091742 (-) 225 WP_013683906.1 LSm family protein -
  ARCVE_RS06170 (Arcve_1238) - 1091814..1092281 (+) 468 WP_013683907.1 DUF1947 domain-containing protein -
  ARCVE_RS06175 (Arcve_1239) - 1092297..1093052 (-) 756 WP_013683908.1 ATP/GTP-binding protein -
  ARCVE_RS06190 (Arcve_1240) epdL 1094235..1095905 (+) 1671 WP_013683909.1 type II/IV secretion system ATPase subunit Machinery gene
  ARCVE_RS06195 (Arcve_1241) - 1095916..1097859 (+) 1944 WP_013683910.1 type II secretion system F family protein -
  ARCVE_RS06200 (Arcve_1242) - 1097881..1098702 (-) 822 WP_013683911.1 DMT family transporter -
  ARCVE_RS11095 (Arcve_1243) - 1098806..1098970 (-) 165 WP_013683912.1 4Fe-4S binding protein -
  ARCVE_RS06205 (Arcve_1244) - 1098977..1099222 (-) 246 WP_013683913.1 thioredoxin family protein -
  ARCVE_RS06210 (Arcve_1245) - 1099255..1100316 (-) 1062 WP_013683914.1 GTP-binding protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 64023.67 Da        Isoelectric Point: 5.8966

>NTDB_id=40248 ARCVE_RS06190 WP_013683909.1 1094235..1095905(+) (epdL) [Archaeoglobus veneficus SNP6]
MRFLRRSKQSEEEKLEEHEKEALEAIERAKKVDKVLKGEEGGKKGLIRKKPIFEPYDEEVHGPLIEFEVPEDWSVVEEYW
IQKPYSKVIVLYSDKEHDHRYIVVEPELDAYETEVFNEVKDALRDVLEEKDVESALKEQVLKETVDFLLKDMKIPISAKS
YYKILYHIVRDFIYYGKITPLMLDKMLEDISCNGYNKPIYVFHRNYANVETNIVFEEEELDAFVITLAQRCGKHISIAEP
MVDATMPDGSRIQMTLGKEVTDHGSTFTIRKFRDVPITPIDLVAWGTFSAEQMAYLWLCIENKKSLIFAGGTASGKTTSM
NAISLFIPRRAKIVTIEDTRELMLPHENWIPAVTRDAFHGEAGAIDMYDLLRAALRQRPEYILVGEVRGKEALTLFQAMS
TGHTTYSTLHADSVNGVIHRLENPPINVPRPMIEALDIVSIQAQTFLGKKRVRRNIEIAEIVGLDPYTKMIRTTTVFQWD
SVKDEHAMIGASKALEDIRRTRGWSVAELQQELARRVAVINFMIEHNLRDFKTVSNIIHTYQSRPEKVLEKMGITV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=40248 ARCVE_RS06190 WP_013683909.1 1094235..1095905(+) (epdL) [Archaeoglobus veneficus SNP6]
ATGAGGTTCCTAAGAAGATCAAAGCAAAGCGAAGAGGAAAAGCTCGAAGAGCACGAAAAGGAGGCTCTTGAAGCTATCGA
AAGAGCAAAAAAAGTGGATAAGGTTCTAAAAGGTGAAGAAGGGGGGAAGAAGGGGTTAATAAGGAAAAAGCCAATCTTCG
AGCCTTACGACGAGGAAGTCCATGGTCCTCTCATTGAATTCGAAGTGCCGGAGGACTGGAGCGTCGTAGAAGAGTACTGG
ATTCAAAAACCCTACAGCAAGGTTATTGTTCTATACAGCGACAAAGAGCACGACCATCGCTACATAGTCGTTGAACCAGA
ACTCGACGCTTACGAGACGGAAGTATTTAACGAGGTCAAAGACGCACTGAGGGACGTGCTTGAGGAGAAAGACGTGGAAT
CTGCATTGAAGGAGCAGGTTCTGAAGGAAACAGTTGACTTCCTTCTCAAAGATATGAAGATCCCCATAAGTGCGAAATCG
TATTACAAGATTCTGTATCACATTGTCCGTGATTTCATCTACTACGGCAAGATTACACCCCTGATGCTGGATAAAATGCT
CGAGGACATCTCGTGCAACGGTTACAACAAACCAATTTACGTTTTCCACCGCAACTACGCCAACGTAGAAACGAACATTG
TTTTTGAGGAAGAAGAGCTTGACGCCTTTGTCATAACCCTTGCACAGCGCTGCGGGAAGCACATAAGCATTGCAGAGCCA
ATGGTCGATGCGACAATGCCGGATGGCAGCAGAATTCAGATGACTCTTGGAAAGGAGGTCACAGACCACGGTTCAACGTT
CACAATCAGAAAGTTCAGAGATGTGCCCATTACACCCATCGACCTCGTGGCGTGGGGTACTTTCTCAGCGGAGCAGATGG
CGTACCTCTGGCTCTGTATAGAGAACAAAAAGAGCCTGATTTTTGCTGGAGGCACTGCAAGCGGTAAAACCACCTCGATG
AATGCGATATCTCTCTTCATCCCGAGAAGAGCGAAGATCGTTACGATTGAGGATACGAGAGAACTCATGCTGCCACACGA
GAACTGGATTCCAGCGGTTACGAGAGATGCTTTCCACGGTGAAGCCGGAGCCATAGACATGTACGACCTGCTTCGAGCTG
CTTTAAGGCAGAGACCTGAATACATACTGGTTGGTGAGGTCAGGGGCAAAGAAGCCCTAACTCTCTTCCAGGCCATGTCA
ACGGGCCACACCACGTACTCAACCCTGCATGCCGACTCCGTTAACGGAGTCATACACCGTCTCGAAAACCCGCCGATAAA
TGTCCCACGCCCGATGATTGAAGCCCTCGACATAGTGAGTATTCAGGCTCAGACGTTTTTGGGAAAGAAGAGAGTCAGAA
GGAACATCGAAATTGCGGAAATCGTTGGCTTGGACCCGTACACCAAGATGATAAGAACCACGACGGTGTTTCAGTGGGAC
AGCGTAAAGGACGAGCACGCAATGATAGGCGCCTCAAAAGCCCTCGAAGACATAAGAAGGACGAGAGGGTGGAGTGTGGC
AGAACTCCAGCAGGAACTCGCTCGAAGGGTGGCGGTGATCAACTTCATGATAGAACACAACCTCAGAGACTTCAAGACTG
TGAGTAACATAATCCACACGTATCAGAGCAGACCGGAGAAAGTTCTGGAGAAAATGGGGATAACTGTTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(184-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2KMX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

53.36

91.007

0.486

Multiple sequence alignment