Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC54_RS04205 Genome accession   NZ_CP046306
Coordinates   791833..793206 (-) Length   457 a.a.
NCBI ID   WP_155975065.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 786833..798206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC54_RS04190 (FOC54_04190) cysE 787992..788621 (-) 630 WP_172457920.1 serine O-acetyltransferase -
  FOC54_RS04195 (FOC54_04195) gltX 789005..790459 (-) 1455 WP_002449039.1 glutamate--tRNA ligase -
  FOC54_RS04200 (FOC54_04200) - 790740..791810 (-) 1071 WP_002488403.1 PIN/TRAM domain-containing protein -
  FOC54_RS04205 (FOC54_04205) radA 791833..793206 (-) 1374 WP_155975065.1 DNA repair protein RadA Machinery gene
  FOC54_RS04210 (FOC54_04210) - 793338..795809 (-) 2472 WP_155975066.1 ATP-dependent Clp protease ATP-binding subunit -
  FOC54_RS04215 (FOC54_04215) - 795825..796832 (-) 1008 WP_002449052.1 protein arginine kinase -
  FOC54_RS04220 (FOC54_04220) - 796825..797388 (-) 564 WP_002449058.1 UvrB/UvrC motif-containing protein -
  FOC54_RS04225 (FOC54_04225) - 797420..797881 (-) 462 WP_002449017.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50408.84 Da        Isoelectric Point: 7.4587

>NTDB_id=402469 FOC54_RS04205 WP_155975065.1 791833..793206(-) (radA) [Staphylococcus hominis strain FDAARGOS_746]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKVQKLNSIKHEITPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPEGVQVVGVTTVHDALKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=402469 FOC54_RS04205 WP_155975065.1 791833..793206(-) (radA) [Staphylococcus hominis strain FDAARGOS_746]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCAAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAACATGGTGTAAAGACAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGATAACACCAAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTGGGTGGCGGAATTGTTAGTGGATCGCTCGTACTGATTGGCGGCGACCCAGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGACTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGTGTACAAAATCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGTTTGCTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGACTGACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCCGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAAGTAAGA
CGAGTATCGCGTATTGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCAAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAGGTCGTTGGCGTGACAACGGTACATGATGCCTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.781

0.652
  radA Streptococcus pneumoniae Rx1

59.382

99.125

0.589
  radA Streptococcus pneumoniae D39

59.382

99.125

0.589
  radA Streptococcus pneumoniae R6

59.382

99.125

0.589
  radA Streptococcus pneumoniae TIGR4

59.382

99.125

0.589
  radA Streptococcus mitis NCTC 12261

59.382

99.125

0.589
  radA Streptococcus mitis SK321

59.382

99.125

0.589

Multiple sequence alignment