Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FOC55_RS09970 Genome accession   NZ_CP046301
Coordinates   2029711..2030427 (-) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_747     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2024711..2035427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC55_RS09950 (FOC55_09955) - 2025379..2025603 (+) 225 WP_002448268.1 sulfurtransferase TusA family protein -
  FOC55_RS09955 (FOC55_09960) - 2025714..2026958 (+) 1245 WP_002448259.1 ammonium transporter -
  FOC55_RS11490 - 2027064..2027131 (+) 68 Protein_1945 LacI family DNA-binding transcriptional regulator -
  FOC55_RS09960 (FOC55_09965) - 2027213..2028700 (+) 1488 WP_049431157.1 sucrose-6-phosphate hydrolase -
  FOC55_RS09965 (FOC55_09970) - 2028701..2029672 (+) 972 WP_065581078.1 carbohydrate kinase family protein -
  FOC55_RS09970 (FOC55_09975) agrA 2029711..2030427 (-) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  FOC55_RS09975 (FOC55_09980) agrC 2030440..2031729 (-) 1290 WP_049431162.1 quorum-sensing sensor histidine kinase AgrC -
  FOC55_RS09980 (FOC55_09985) agrD 2031753..2031893 (-) 141 WP_049417668.1 cyclic lactone autoinducer peptide AgrD -
  FOC55_RS09985 (FOC55_09990) - 2031896..2032462 (-) 567 WP_002455090.1 accessory gene regulator AgrB -
  FOC55_RS09990 (FOC55_09995) - 2033164..2033949 (-) 786 WP_002488076.1 carbon-nitrogen family hydrolase -
  FOC55_RS09995 (FOC55_10000) - 2034080..2034703 (-) 624 WP_002455092.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=402457 FOC55_RS09970 WP_002455088.1 2029711..2030427(-) (agrA) [Staphylococcus hominis strain FDAARGOS_747]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=402457 FOC55_RS09970 WP_002455088.1 2029711..2030427(-) (agrA) [Staphylococcus hominis strain FDAARGOS_747]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAACAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTGGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTAAAAACGCGAATAATAGATTGCATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGCAATGTTGAAACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCACATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGTCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874

Multiple sequence alignment