Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC55_RS05145 Genome accession   NZ_CP046301
Coordinates   1046013..1047386 (-) Length   457 a.a.
NCBI ID   WP_065580957.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_747     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041013..1052386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC55_RS05130 (FOC55_05130) cysE 1042172..1042801 (-) 630 WP_172457920.1 serine O-acetyltransferase -
  FOC55_RS05135 (FOC55_05135) gltX 1043185..1044639 (-) 1455 WP_002449039.1 glutamate--tRNA ligase -
  FOC55_RS05140 (FOC55_05140) - 1044920..1045990 (-) 1071 WP_002488403.1 PIN/TRAM domain-containing protein -
  FOC55_RS05145 (FOC55_05145) radA 1046013..1047386 (-) 1374 WP_065580957.1 DNA repair protein RadA Machinery gene
  FOC55_RS05150 (FOC55_05150) - 1047518..1049989 (-) 2472 WP_049418287.1 ATP-dependent Clp protease ATP-binding subunit -
  FOC55_RS05155 (FOC55_05155) - 1050005..1051012 (-) 1008 WP_002449052.1 protein arginine kinase -
  FOC55_RS05160 (FOC55_05160) - 1051005..1051568 (-) 564 WP_002455761.1 UvrB/UvrC motif-containing protein -
  FOC55_RS05165 (FOC55_05165) - 1051600..1052061 (-) 462 WP_002449017.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50424.84 Da        Isoelectric Point: 7.4587

>NTDB_id=402445 FOC55_RS05145 WP_065580957.1 1046013..1047386(-) (radA) [Staphylococcus hominis strain FDAARGOS_747]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKVQKLNSIKHETTPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPEGVQVVGVTTVHDVLKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=402445 FOC55_RS05145 WP_065580957.1 1046013..1047386(-) (radA) [Staphylococcus hominis strain FDAARGOS_747]
TTGGCCAAAAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCAAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAACATGGTGTAAAGACAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGACAACACCAAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTTGGTGGCGGAATTGTTAGTGGATCGCTCGTACTAATTGGCGGCGACCCAGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGACTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGTGTACAAAATCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGCTTACTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGACTGACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCCGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAAGTAAGA
CGAGTATCGCGTATTGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCAAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAGGTCGTTGGCGTGACAACGGTACATGATGTCTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)

AAA domain (AAA_25)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

99.781

0.65
  radA Streptococcus pneumoniae Rx1

59.603

99.125

0.591
  radA Streptococcus pneumoniae D39

59.603

99.125

0.591
  radA Streptococcus pneumoniae R6

59.603

99.125

0.591
  radA Streptococcus pneumoniae TIGR4

59.603

99.125

0.591
  radA Streptococcus mitis NCTC 12261

59.603

99.125

0.591
  radA Streptococcus mitis SK321

59.603

99.125

0.591

Multiple sequence alignment