Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FOB21_RS11205 Genome accession   NZ_CP046296
Coordinates   2050034..2050360 (+) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS_552     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2045034..2055360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB21_RS11180 (FOB21_11180) hemC 2045717..2046640 (+) 924 WP_155861687.1 hydroxymethylbilane synthase -
  FOB21_RS11185 (FOB21_11185) - 2046640..2047419 (+) 780 WP_155861688.1 uroporphyrinogen-III synthase -
  FOB21_RS11190 (FOB21_11190) - 2047416..2048255 (+) 840 WP_155861689.1 hypothetical protein -
  FOB21_RS11195 (FOB21_11195) - 2048262..2049455 (+) 1194 WP_155861690.1 heme biosynthesis protein HemY -
  FOB21_RS11200 (FOB21_11200) - 2049464..2049892 (+) 429 WP_155861894.1 acyl-CoA thioesterase -
  FOB21_RS11205 (FOB21_11205) hns 2050034..2050360 (+) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  FOB21_RS11210 (FOB21_11210) gspN 2050543..2051286 (+) 744 WP_004729292.1 type II secretion system protein N -
  FOB21_RS11215 (FOB21_11215) - 2051286..2052140 (+) 855 WP_004729294.1 type II secretion system protein N -
  FOB21_RS11220 (FOB21_11220) gspD 2052179..2054443 (+) 2265 WP_005102817.1 type II secretion system secretin GspD -
  FOB21_RS11225 (FOB21_11225) - 2054506..2055165 (+) 660 WP_004729299.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=402414 FOB21_RS11205 WP_026055760.1 2050034..2050360(+) (hns) [Acinetobacter lwoffii strain FDAARGOS_552]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=402414 FOB21_RS11205 WP_026055760.1 2050034..2050360(+) (hns) [Acinetobacter lwoffii strain FDAARGOS_552]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAATCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGATGCTTATCAGCAAATCTTGGCAGTTGCCGAGAAAGTTGGTATGACGGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAGCGTAAGAAATCATCACGTAAGTCGGTTGAGCCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCACGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787

Multiple sequence alignment