Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   FOB21_RS03110 Genome accession   NZ_CP046296
Coordinates   439087..439728 (-) Length   213 a.a.
NCBI ID   WP_004278869.1    Uniprot ID   A0A6N1KTR0
Organism   Acinetobacter lwoffii strain FDAARGOS_552     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434087..444728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB21_RS03080 (FOB21_03080) - 434468..434899 (-) 432 WP_004278856.1 SRPBCC family protein -
  FOB21_RS03085 (FOB21_03085) tadA 434960..435475 (-) 516 WP_004278860.1 tRNA adenosine(34) deaminase TadA -
  FOB21_RS03090 (FOB21_03090) - 435482..436603 (-) 1122 WP_004278862.1 enoyl-CoA hydratase/isomerase family protein -
  FOB21_RS03095 (FOB21_03095) ung 436600..437313 (-) 714 WP_004731474.1 uracil-DNA glycosylase -
  FOB21_RS03100 (FOB21_03100) - 437360..437956 (-) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  FOB21_RS03105 (FOB21_03105) gspK 438109..439080 (-) 972 WP_017397825.1 type II secretion system minor pseudopilin GspK -
  FOB21_RS03110 (FOB21_03110) xcpW 439087..439728 (-) 642 WP_004278869.1 type II secretion system minor pseudopilin GspJ Machinery gene
  FOB21_RS03115 (FOB21_03115) gspI 439725..440294 (-) 570 WP_167513708.1 type II secretion system minor pseudopilin GspI -
  FOB21_RS03120 (FOB21_03120) - 440284..440835 (-) 552 WP_004278872.1 type II secretion system protein -
  FOB21_RS03125 (FOB21_03125) - 440845..441459 (-) 615 WP_004278873.1 TetR/AcrR family transcriptional regulator -
  FOB21_RS03130 (FOB21_03130) - 441501..442274 (-) 774 WP_004278875.1 TatD family hydrolase -
  FOB21_RS03135 (FOB21_03135) - 442302..442643 (-) 342 WP_004278877.1 PilZ domain-containing protein -
  FOB21_RS03140 (FOB21_03140) - 442659..443639 (-) 981 WP_085064301.1 DNA polymerase III subunit delta' -
  FOB21_RS03145 (FOB21_03145) kdsB 443654..444415 (-) 762 WP_005106564.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24303.50 Da        Isoelectric Point: 4.5453

>NTDB_id=402395 FOB21_RS03110 WP_004278869.1 439087..439728(-) (xcpW) [Acinetobacter lwoffii strain FDAARGOS_552]
MKPKGFTLVELMVAIAIFAVLSALGWKVFDYIVKTKDQNVIHEQRLGQLQQTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGQDQPESSVLLSEVEQFQIVVLNPNELTQWPD
ASTDLNQLEQKQRLPKGVKINLTVNGVSYEWMFSLLNTDFLLDTQNTGQPSSE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=402395 FOB21_RS03110 WP_004278869.1 439087..439728(-) (xcpW) [Acinetobacter lwoffii strain FDAARGOS_552]
ATGAAGCCTAAAGGATTTACCCTGGTTGAATTAATGGTCGCAATTGCGATCTTTGCGGTGCTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAGAATGTGATTCATGAACAGCGTTTAGGTCAGTTACAGCAAACCTATC
AGCAGATTCTGCGAGATACCGTACAGGCAGTACCCTTAACGGCCAATATCAATGGCGATATTCAGCCGGCTCTAGTGCTA
CAGAACGGACGCTTTAATTTCAGTAAAACTGGAGTGACTGACCCTTTGGAAGAGGGGATTTCCCCAGATGAGCGCATTGA
ATATCAGTATCGAGCTGATGAGCAGAAACTTTATCGCTTGAAATACCGGAACCTGAATCAGACAGGTCAAGATCAGCCCG
AATCCAGTGTTTTATTGTCGGAAGTGGAACAATTCCAGATCGTCGTACTCAATCCGAATGAGCTCACGCAATGGCCAGAT
GCTTCTACTGATCTGAATCAGTTAGAGCAGAAGCAAAGGTTGCCTAAAGGGGTTAAAATCAATTTAACCGTGAATGGCGT
CAGTTATGAATGGATGTTTAGTTTATTAAATACGGACTTTTTGCTTGATACTCAGAACACCGGTCAACCCAGCTCAGAAT
AA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.209

94.366

0.549

Multiple sequence alignment