Detailed information NTG0402389

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUZ63_RS05750
• Genome accession: NZ_CP054965
• Coordinates: 1199952..1200944 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STIN_95
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1194952..1205944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ63_RS05720 (HUZ63_05630)	ispD	1195013..1195723 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HUZ63_RS05725 (HUZ63_05635)	ispF	1195723..1196202 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUZ63_RS05730 (HUZ63_05640)	truD	1196199..1197248 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HUZ63_RS05735 (HUZ63_05645)	surE	1197229..1197990 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
HUZ63_RS05740 (HUZ63_05650)	pcm	1197984..1198610 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HUZ63_RS05745 (HUZ63_05655)	nlpD	1198795..1199889 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
HUZ63_RS05750 (HUZ63_05660)	rpoS	1199952..1200944 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HUZ63_RS05755 (HUZ63_05665)	-	1201115..1201666 (-)	552	WP_001179443.1	flavodoxin family protein	-
HUZ63_RS05760 (HUZ63_05670)	-	1201891..1202934 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HUZ63_RS05765 (HUZ63_05675)	ygbN	1203077..1204441 (-)	1365	WP_000104433.1	GntP family transporter	-
HUZ63_RS05770 (HUZ63_05680)	ygbM	1204530..1205306 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=402389 HUZ63_RS05750 WP_000081550.1 1199952..1200944(+) (rpoS) [Escherichia coli strain STIN_95]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=402389 HUZ63_RS05750 WP_000081550.1 1199952..1200944(+) (rpoS) [Escherichia coli strain STIN_95]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715