Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SSAL_RS09950 Genome accession   NC_017594
Coordinates   2111757..2112533 (-) Length   258 a.a.
NCBI ID   WP_014633736.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106757..2117533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS09935 (Ssal_02141) purC 2109330..2110037 (-) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  SSAL_RS09940 (Ssal_02142) - 2110296..2110541 (-) 246 WP_045002015.1 phosphopantetheine-binding protein -
  SSAL_RS09945 (Ssal_02143) plsX 2110541..2111545 (-) 1005 WP_045002017.1 phosphate acyltransferase PlsX -
  SSAL_RS09950 (Ssal_02144) recO 2111757..2112533 (-) 777 WP_014633736.1 DNA repair protein RecO Machinery gene
  SSAL_RS09955 (Ssal_02145) - 2112520..2113695 (-) 1176 WP_014633737.1 pyridoxal phosphate-dependent aminotransferase -
  SSAL_RS10305 - 2113988..2114242 (+) 255 WP_252866509.1 hypothetical protein -
  SSAL_RS09960 (Ssal_02146) - 2114239..2114694 (+) 456 WP_252866510.1 transposase -
  SSAL_RS09965 (Ssal_02147) - 2114771..2115157 (+) 387 WP_014633739.1 IS110 family transposase -
  SSAL_RS09970 (Ssal_02148) - 2115265..2116230 (-) 966 WP_002886286.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29836.94 Da        Isoelectric Point: 4.9590

>NTDB_id=40236 SSAL_RS09950 WP_014633736.1 2111757..2112533(-) (recO) [Streptococcus salivarius 57.I]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFIMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDVAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECIFCHRVGL
PFDFSYKFSGLLCSNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNNKEDSAD

Nucleotide


Download         Length: 777 bp        

>NTDB_id=40236 SSAL_RS09950 WP_014633736.1 2111757..2112533(-) (recO) [Streptococcus salivarius 57.I]
ATGCAGAAGCTTGAGAGTAGAGGACTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTGGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATAATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGTTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTATCTTTTGCCATCGTGTAGGCCTT
CCTTTTGACTTTTCGTATAAGTTCTCGGGGTTACTTTGTTCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTAGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTCGAGGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGACATATTATGAATAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.024

98.45

0.601

Multiple sequence alignment