Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FOC20_RS01205 Genome accession   NZ_CP046291
Coordinates   221958..222563 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain FDAARGOS_712     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 216958..227563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC20_RS01190 (FOC20_01190) helD 217175..219229 (-) 2055 WP_156010145.1 DNA helicase IV -
  FOC20_RS01195 (FOC20_01195) - 219353..219799 (+) 447 WP_001261222.1 YccF domain-containing protein -
  FOC20_RS01200 (FOC20_01200) yccS 219818..221971 (+) 2154 WP_156010146.1 YccS family putative transporter -
  FOC20_RS01205 (FOC20_01205) sxy/tfoX 221958..222563 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  FOC20_RS01210 (FOC20_01210) sulA 222780..223289 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  FOC20_RS01215 (FOC20_01215) ompA 223646..224698 (+) 1053 WP_001670727.1 porin OmpA -
  FOC20_RS01220 (FOC20_01220) matP 224770..225222 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FOC20_RS01225 (FOC20_01225) - 225408..227168 (+) 1761 WP_156010147.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=402335 FOC20_RS01205 WP_001202375.1 221958..222563(-) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_712]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=402335 FOC20_RS01205 WP_001202375.1 221958..222563(-) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_712]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment