Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FOC23_RS21760 Genome accession   NZ_CP046286
Coordinates   4188886..4189515 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain FDAARGOS_715     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4183886..4194515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC23_RS21740 (FOC23_21705) - 4184289..4186049 (-) 1761 WP_000156526.1 Lon protease family protein -
  FOC23_RS21745 (FOC23_21710) matP 4186235..4186687 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FOC23_RS21750 (FOC23_21715) ompA 4186763..4187803 (-) 1041 WP_000750416.1 porin OmpA -
  FOC23_RS21755 (FOC23_21720) sulA 4188158..4188667 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FOC23_RS21760 (FOC23_21725) sxy/tfoX 4188886..4189515 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FOC23_RS21765 (FOC23_21730) yccS 4189478..4191640 (-) 2163 WP_000875023.1 YccS family putative transporter -
  FOC23_RS21770 (FOC23_21735) - 4191650..4192096 (-) 447 WP_001261235.1 YccF domain-containing protein -
  FOC23_RS21775 (FOC23_21740) helD 4192219..4194273 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=402332 FOC23_RS21760 WP_000839153.1 4188886..4189515(+) (sxy/tfoX) [Shigella sonnei strain FDAARGOS_715]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=402332 FOC23_RS21760 WP_000839153.1 4188886..4189515(+) (sxy/tfoX) [Shigella sonnei strain FDAARGOS_715]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment