Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FOB96_RS05140 Genome accession   NZ_CP046280
Coordinates   1098677..1099282 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain FDAARGOS_688     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093677..1104282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB96_RS05120 (FOB96_05120) - 1094072..1095832 (-) 1761 WP_000156462.1 AAA family ATPase -
  FOB96_RS05125 (FOB96_05125) matP 1096018..1096470 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FOB96_RS05130 (FOB96_05130) ompA 1096542..1097594 (-) 1053 WP_001562588.1 porin OmpA -
  FOB96_RS05135 (FOB96_05135) sulA 1097951..1098460 (-) 510 WP_156016758.1 SOS-induced cell division inhibitor SulA -
  FOB96_RS05140 (FOB96_05140) sxy/tfoX 1098677..1099282 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  FOB96_RS05145 (FOB96_05145) yccS 1099269..1101422 (-) 2154 WP_156016760.1 YccS family putative transporter -
  FOB96_RS05150 (FOB96_05150) - 1101441..1101887 (-) 447 WP_156016762.1 YccF domain-containing protein -
  FOB96_RS05155 (FOB96_05155) helD 1102011..1104065 (+) 2055 WP_156016764.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=402272 FOB96_RS05140 WP_001202375.1 1098677..1099282(+) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_688]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=402272 FOB96_RS05140 WP_001202375.1 1098677..1099282(+) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_688]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGTGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment