Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FOC15_RS20350 Genome accession   NZ_CP046279
Coordinates   4302936..4303541 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain FDAARGOS_707     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4297936..4308541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC15_RS20330 (FOC15_20330) - 4298331..4300091 (-) 1761 WP_000156458.1 AAA family ATPase -
  FOC15_RS20335 (FOC15_20335) matP 4300277..4300729 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FOC15_RS20340 (FOC15_20340) ompA 4300801..4301853 (-) 1053 WP_001562588.1 porin OmpA -
  FOC15_RS20345 (FOC15_20345) sulA 4302210..4302719 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  FOC15_RS20350 (FOC15_20350) sxy/tfoX 4302936..4303541 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  FOC15_RS20355 (FOC15_20355) yccS 4303528..4305681 (-) 2154 WP_000950879.1 YccS family putative transporter -
  FOC15_RS20360 (FOC15_20360) - 4305700..4306146 (-) 447 WP_001261222.1 YccF domain-containing protein -
  FOC15_RS20365 (FOC15_20365) helD 4306270..4308324 (+) 2055 WP_079915759.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=402269 FOC15_RS20350 WP_001202375.1 4302936..4303541(+) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_707]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=402269 FOC15_RS20350 WP_001202375.1 4302936..4303541(+) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_707]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment