Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HUT14_RS11015 Genome accession   NZ_CP054939
Coordinates   2459760..2461688 (+) Length   642 a.a.
NCBI ID   WP_176117166.1    Uniprot ID   -
Organism   Streptomyces sp. NA02536     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2454760..2466688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT14_RS10980 (HUT14_10985) - 2455320..2455484 (+) 165 WP_163013239.1 hypothetical protein -
  HUT14_RS11000 (HUT14_11005) - 2456100..2456405 (+) 306 WP_121545895.1 YtxH domain-containing protein -
  HUT14_RS11005 (HUT14_11010) - 2456466..2457920 (+) 1455 WP_004931600.1 FGGY family carbohydrate kinase -
  HUT14_RS11010 (HUT14_11015) rcrP 2458027..2459760 (+) 1734 WP_121545896.1 ABC transporter ATP-binding protein Regulator
  HUT14_RS11015 (HUT14_11020) rcrQ 2459760..2461688 (+) 1929 WP_176117166.1 ABC transporter ATP-binding protein Regulator
  HUT14_RS11020 (HUT14_11025) - 2461777..2462991 (-) 1215 WP_142170964.1 RNA polymerase sigma factor -
  HUT14_RS11025 (HUT14_11030) dnaG 2463105..2465027 (-) 1923 WP_121545899.1 DNA primase -
  HUT14_RS11030 (HUT14_11035) - 2465152..2466417 (-) 1266 WP_142170960.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69494.56 Da        Isoelectric Point: 5.0690

>NTDB_id=402233 HUT14_RS11015 WP_176117166.1 2459760..2461688(+) (rcrQ) [Streptomyces sp. NA02536]
MAGPGGRMMAGGGPGQRSIDFKGSSKRLIARFRPERATIGALLACVVLSVGLSVIGPKILGRATDLVFAGIVGRDMPEGA
TKEQVLESMRERGDGDVADMLRGTDFTPGEGIDFTAVGDVLLFALGVFLVAGLLMAVATRLVNRAVNHTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGTLNAHIEEMYTGHTLVKVFGRQEESAKQFAEENEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADASPAERPAEPRGRVALE
RVSFRYDPDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGAAREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAQLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=402233 HUT14_RS11015 WP_176117166.1 2459760..2461688(+) (rcrQ) [Streptomyces sp. NA02536]
ATGGCGGGGCCCGGAGGGCGGATGATGGCCGGGGGCGGCCCCGGCCAGCGCTCGATCGACTTCAAGGGGTCGAGCAAACG
GCTGATCGCGCGGTTCCGGCCGGAACGCGCGACGATCGGCGCGCTGCTGGCCTGTGTCGTGCTGAGCGTCGGCCTCAGCG
TGATCGGGCCGAAGATCCTCGGCAGGGCGACCGACCTGGTCTTCGCCGGCATCGTCGGGCGGGACATGCCCGAGGGCGCC
ACCAAGGAGCAGGTGCTCGAGTCGATGCGGGAGCGGGGCGACGGCGATGTCGCCGACATGCTCCGCGGCACCGACTTCAC
CCCCGGCGAGGGCATCGACTTCACGGCGGTGGGCGACGTCCTGCTGTTCGCGCTGGGGGTGTTCCTGGTCGCCGGTCTGC
TGATGGCGGTCGCGACCCGGCTGGTGAACCGGGCCGTCAACCACACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTCGCGATGATGT
TCTACGTCTCGTGGATCCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTCGTCGCCACCCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCACCCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGGAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTATGTGCTGGTGGCC
GTCGTCGGCGGGCTGCGGGTCGCGTCGGGCTCGCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCCGACGCCTCGCCGGCCGAGCGGCCGGCCGAGCCGCGCGGGCGGGTGGCGCTGGAG
CGGGTGTCGTTCCGTTACGACCCCGACAAGCCGCTGATCGAGGACCTGTCGCTGGCGGTCGAGCCGGGCCACACGGTGGC
GATCGTCGGGCCGACGGGAGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGGA
TCACCCTCGACGGGGTGGACATCGCGCGGATGTCCCGGGACGAACTGCGGTCCGGCATCGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCGGCGCGGGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCGGACCGCTTCATCCGGACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTCGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGCACGGAGGTGCTGATCCAGAAGGCGATGGCGCAACTGGCGCACGGCCGCACGTCGTT
CGTGATCGCGCACCGGCTGTCCACGATCCGCGACGCGGACACCATCCTGGTCATGGAGAACGGCTCGATCGTCGAACAGG
GCGCCCACACCGAGCTGCTGGCGGCGGACGGCGCGTACGCCCGCCTCTACAAGGCCCAGTTCGCCCAGGCGGTGGCGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.354

96.885

0.391