Detailed information NTG0402181

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUT15_RS21070
• Genome accession: NZ_CP054920
• Coordinates: 4733709..4734707 (+)
• Length: 332 a.a.
• NCBI ID: WP_030190975.1
• Uniprot ID: A0A6B3QQG4
• Organism: Streptomyces sp. NA03103
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4728709..4739707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT15_RS21045 (HUT15_21040)	-	4728982..4729635 (+)	654	WP_125630880.1	TetR/AcrR family transcriptional regulator	-
HUT15_RS21050 (HUT15_21045)	-	4729866..4731413 (+)	1548	WP_102929045.1	MFS transporter	-
HUT15_RS21055 (HUT15_21050)	-	4731523..4732014 (-)	492	WP_102929031.1	MarR family winged helix-turn-helix transcriptional regulator	-
HUT15_RS21060 (HUT15_21055)	-	4732136..4732897 (+)	762	WP_102929030.1	dioxygenase	-
HUT15_RS21065 (HUT15_21060)	-	4732978..4733496 (-)	519	WP_125630882.1	GNAT family N-acetyltransferase	-
HUT15_RS21070 (HUT15_21065)	rpoS	4733709..4734707 (+)	999	WP_030190975.1	RNA polymerase sigma factor RpoD/SigA	Regulator
HUT15_RS21075 (HUT15_21070)	-	4735204..4735959 (+)	756	WP_125630884.1	TetR/AcrR family transcriptional regulator	-
HUT15_RS21080 (HUT15_21075)	-	4735996..4736967 (-)	972	WP_176154974.1	YafY family protein	-
HUT15_RS21085 (HUT15_21080)	-	4737031..4738638 (+)	1608	WP_176154976.1	MFS transporter	-
HUT15_RS21090 (HUT15_21085)	-	4738826..4739587 (+)	762	WP_102929025.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37154.81 Da
• Isoelectric Point: 4.9068

>NTDB_id=402181 HUT15_RS21070 WP_030190975.1 4733709..4734707(+) (rpoS) [Streptomyces sp. NA03103]
MATRAVARRKSATGETSGSATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=402181 HUT15_RS21070 WP_030190975.1 4733709..4734707(+) (rpoS) [Streptomyces sp. NA03103]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCTCGGCAACCAGCGTCCGCGCGAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTCGAAGGGTACGAGGAGACCGGGGCGGAC
GCCACCCGTGAGGAACTCCAGGCCCTGATCGACGAGGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCGGTGGCCCGCCGCTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGGTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCCACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGTTGGAGGACACCTCCGCCGTGTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGGCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACGCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

3D structure

• AlphaFold DB: A0A6B3QQG4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364