Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Vspart_RS18380 Genome accession   NZ_CP046269
Coordinates   392717..393892 (+) Length   391 a.a.
NCBI ID   WP_074371167.1    Uniprot ID   A0A1N6LZG4
Organism   Vibrio spartinae strain 3.6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 387717..398892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS18370 (Vspart_03800) - 388049..389191 (+) 1143 WP_074371169.1 efflux RND transporter periplasmic adaptor subunit -
  Vspart_RS18375 (Vspart_03801) - 389191..392268 (+) 3078 WP_074371168.1 efflux RND transporter permease subunit -
  Vspart_RS18380 (Vspart_03802) cqsA 392717..393892 (+) 1176 WP_074371167.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Vspart_RS18385 (Vspart_03803) - 393939..395720 (-) 1782 WP_228449081.1 hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43941.31 Da        Isoelectric Point: 6.6827

>NTDB_id=402176 Vspart_RS18380 WP_074371167.1 392717..393892(+) (cqsA) [Vibrio spartinae strain 3.6]
MNNISKKLPDFIQSKINFHIHDLIEFNKNGKHLVLGKRPSSKDIVMQSNDYLCLANNSTIKHQMVDSIMRMDDSILMSAI
YLQDENSKPSIEQRLSEFTNFDSCLLSQSGWNANVGLLQAICSPDTNVYIDFFTHMSVWEGARYANAKVHPFMHNNMKHL
RKLIKRHGPGIIAVDSIYSTLGTITPLKELVEIAKEFGCATVIDESHSLGIYGKHGAGLIEELNLSREVDFMTASLAKSF
AYRAGAIWANNNVNQCIPFVSYPAIFSSALLPYDIDTLSAILDLISESDDRRHRLFYLSDKLRKGLIQLGIKIRSQSQII
SIETGDEGNTELVRDILENNGIFGAVFCRPATPKNSNLIRFSLNSSMTDSDIDKILSVCHLLVQNDEVFFK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=402176 Vspart_RS18380 WP_074371167.1 392717..393892(+) (cqsA) [Vibrio spartinae strain 3.6]
ATGAACAATATTAGTAAAAAATTACCAGATTTTATTCAGTCAAAGATCAATTTTCATATTCATGACTTAATTGAATTTAA
TAAAAACGGGAAACATCTTGTTTTAGGTAAGCGTCCCAGTAGTAAAGATATTGTAATGCAAAGTAATGATTATTTATGTT
TGGCAAATAATAGCACTATAAAGCATCAAATGGTCGACTCAATTATGAGAATGGATGATAGCATCTTAATGTCTGCCATT
TATCTGCAAGATGAAAATTCTAAGCCGTCTATAGAGCAGCGACTTTCAGAATTTACTAACTTTGATAGTTGCTTACTCTC
ACAATCTGGGTGGAACGCTAACGTTGGGTTATTACAAGCAATTTGCTCTCCGGATACGAATGTTTATATTGATTTTTTCA
CTCATATGTCAGTATGGGAGGGGGCTCGATATGCAAATGCGAAAGTACATCCGTTTATGCATAATAACATGAAGCATCTA
CGAAAATTAATTAAAAGACATGGCCCGGGAATCATTGCTGTCGATTCGATATACAGTACATTAGGTACGATCACACCATT
GAAAGAGCTTGTTGAGATTGCAAAAGAGTTTGGCTGTGCGACTGTGATTGATGAATCTCACTCTTTGGGTATCTATGGTA
AACATGGGGCTGGTTTGATTGAGGAGCTGAATTTATCAAGAGAAGTTGATTTTATGACTGCCAGCCTAGCTAAATCTTTT
GCGTACAGAGCCGGTGCTATATGGGCAAATAATAATGTTAATCAGTGTATACCTTTTGTGAGTTATCCTGCGATATTTAG
TTCTGCTCTATTGCCTTATGATATCGATACACTTAGTGCCATATTAGATTTAATCTCTGAATCAGATGATCGAAGACATC
GTCTCTTTTATCTCTCAGATAAACTCAGAAAAGGACTCATTCAACTCGGTATTAAAATTAGAAGTCAGTCTCAGATCATA
TCAATAGAAACTGGAGATGAGGGAAATACTGAGTTAGTCCGTGATATTTTAGAAAATAATGGAATATTTGGGGCTGTTTT
TTGCCGTCCAGCGACGCCTAAGAATAGCAACCTAATTCGGTTTTCCTTGAATAGTTCTATGACGGATAGTGATATTGATA
AAATATTATCCGTCTGTCATTTATTAGTTCAAAATGATGAGGTGTTTTTTAAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6LZG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

64.675

98.465

0.637

Multiple sequence alignment