Detailed information NTG0402167

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Vspart_RS13215
• Genome accession: NZ_CP046268
• Coordinates: 3035175..3036161 (-)
• Length: 328 a.a.
• NCBI ID: WP_074371875.1
• Uniprot ID: A0A1N6M1I8
• Organism: Vibrio spartinae strain 3.6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3030175..3041161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vspart_RS13200 (Vspart_02714)	-	3030269..3032326 (+)	2058	WP_074371871.1	ATP-binding protein	-
Vspart_RS13205 (Vspart_02715)	hpxO	3032370..3033524 (-)	1155	WP_182287690.1	FAD-dependent urate hydroxylase HpxO	-
Vspart_RS13210 (Vspart_02716)	-	3034030..3035079 (+)	1050	WP_182287691.1	pectate lyase	-
Vspart_RS13215 (Vspart_02717)	rpoS	3035175..3036161 (-)	987	WP_074371875.1	RNA polymerase sigma factor RpoS	Regulator
Vspart_RS13220 (Vspart_02718)	-	3036243..3037151 (-)	909	WP_074371876.1	peptidoglycan DD-metalloendopeptidase family protein	-
Vspart_RS13225 (Vspart_02719)	-	3037154..3037780 (-)	627	WP_074371877.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Vspart_RS13230 (Vspart_02720)	surE	3037786..3038526 (-)	741	WP_074371878.1	5'/3'-nucleotidase SurE	-
Vspart_RS13235 (Vspart_02721)	truD	3038530..3039576 (-)	1047	WP_074371879.1	tRNA pseudouridine(13) synthase TruD	-
Vspart_RS13240 (Vspart_02722)	ispF	3039657..3040130 (-)	474	WP_182287692.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Vspart_RS13245 (Vspart_02723)	ispD	3040176..3040868 (-)	693	WP_074371881.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Vspart_RS13250 (Vspart_02724)	ftsB	3040869..3041150 (-)	282	WP_074371882.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37636.48 Da
• Isoelectric Point: 4.6440

>NTDB_id=402167 Vspart_RS13215 WP_074371875.1 3035175..3036161(-) (rpoS) [Vibrio spartinae strain 3.6]
MSKSNSVTKVGQFDFDSGAFDLNTLDNEVSSDATPVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIAFELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=402167 Vspart_RS13215 WP_074371875.1 3035175..3036161(-) (rpoS) [Vibrio spartinae strain 3.6]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGGTCAATTTGATTTTGATTCAGGAGCGTTTGATCTCAATACATTGGACAA
TGAGGTCAGTTCTGACGCTACACCCGTCGAAACTCGAGAAGATTACGAAGTAACTTCCAAGAGCTTAGACGCAACTCAAC
TCTATTTAGGCGAAATTGGTTTTTCTCCTTTGTTAACCGCAGAGGAAGAAATCCTGTATGCACGTCGGGCTCTCCGGGGT
GATGAGGCCGCTCGTAAACGAATGATTGAGAGTAATCTACGTCTCGTTGTTAAAATATCTCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTAATCGAAGAAGGTAATCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCAGAAAGAGGAT
TTCGCTTTTCTACGTATGCAACCTGGTGGATCCGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATACACGTTGTCAAAGAACTGAATATTTATTTACGGACAGCACGTGAGCTATCACAGAAGTTAGACCATGAACC
AACAGCGGAAGACATTGCGTTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTCCGTCTGAATGAACGTATTA
GTTCTGTTGATACACCGATTGGTGGTGATGGTGATAAAGCATTGTTGGATATCATTCCTGATGCAAAACACTATGACCCA
GAATATTCGACAGAAGATGATGATATCAAATCTTCACTCTTACATTGGTTAGATGAACTAAATCCGAAACAGAAAGAAGT
GTTGGCAAGACGCTTTGGCTTGCTCGGCTATGAACCATCCACTTTAGAAGAAGTTGGTAAAGAGATTAATCTAACCCGTG
AGCGAGTTCGTCAAATCCAAGTCGAAGGCCTGCGTCGTTTGAGAGAAATTCTACTGAAACAAGGCTTGAATATGGAGTCT
TTGTTCGATGTAGAGAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

3D structure

• AlphaFold DB: A0A1N6M1I8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.53	100	0.835