Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Vspart_RS13010 Genome accession   NZ_CP046268
Coordinates   2988858..2989376 (-) Length   172 a.a.
NCBI ID   WP_074371842.1    Uniprot ID   A0A1N6M1I6
Organism   Vibrio spartinae strain 3.6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983858..2994376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS12985 (Vspart_02671) rimM 2983930..2984484 (-) 555 WP_074371837.1 ribosome maturation factor RimM -
  Vspart_RS12990 (Vspart_02672) rpsP 2984507..2984755 (-) 249 WP_074371838.1 30S ribosomal protein S16 -
  Vspart_RS12995 (Vspart_02673) ffh 2984933..2986300 (-) 1368 WP_074371839.1 signal recognition particle protein -
  Vspart_RS13000 (Vspart_02674) - 2986553..2987347 (+) 795 WP_074371840.1 inner membrane protein YpjD -
  Vspart_RS13005 (Vspart_02675) - 2987430..2988704 (+) 1275 WP_074371841.1 HlyC/CorC family transporter -
  Vspart_RS13010 (Vspart_02676) luxS 2988858..2989376 (-) 519 WP_074371842.1 S-ribosylhomocysteine lyase Regulator
  Vspart_RS13015 (Vspart_02677) gshA 2989527..2991128 (-) 1602 WP_182287678.1 glutamate--cysteine ligase -
  Vspart_RS13020 (Vspart_02678) - 2991227..2994069 (-) 2843 Protein_2556 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18911.70 Da        Isoelectric Point: 4.9665

>NTDB_id=402164 Vspart_RS13010 WP_074371842.1 2988858..2989376(-) (luxS) [Vibrio spartinae strain 3.6]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTIPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIVDISP
MGCRTGFYMSLIGAPSEQRVADAWLAAMQDVLKVEDQNKIPELNIYQCGTAAMHSLGEAKDIAKTVISSGIRVNQNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=402164 Vspart_RS13010 WP_074371842.1 2988858..2989376(-) (luxS) [Vibrio spartinae strain 3.6]
ATGCCATTATTAGATAGTTTTACGGTGGATCATACACGTATGAATGCCCCAGCCGTCCGTGTTGCTAAAACAATGAATAC
CCCGAAAGGCGATACGATTACGGTGTTTGATTTACGCTTTACCATACCGAATCAAGATATCCTTTCCGAGAAAGGTATTC
ATACATTAGAACACTTATTTGCGGGCTTTATGAGAGCTCATCTCAATGGTAACGGTGTTGAAATTGTTGATATTTCCCCG
ATGGGATGTCGGACTGGCTTCTACATGAGCTTAATCGGTGCACCTTCTGAGCAGCGAGTTGCTGATGCTTGGTTAGCCGC
AATGCAGGATGTACTGAAGGTTGAAGACCAGAACAAAATTCCGGAATTAAACATTTATCAATGCGGAACTGCAGCGATGC
ACTCTCTGGGTGAGGCGAAAGACATTGCCAAAACTGTGATTTCAAGTGGTATTCGCGTGAATCAGAATGATGATCTGGCG
CTACCGGAATCAATGCTTCAGGAACTGAAAGTGGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M1I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment