Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GMB29_RS03550 Genome accession   NZ_CP046266
Coordinates   681686..682642 (+) Length   318 a.a.
NCBI ID   WP_136353463.1    Uniprot ID   A0A4S4BXS5
Organism   Metabacillus sediminilitoris strain DSL-17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676686..687642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMB29_RS03535 (GMB29_03535) mgrA 678185..679177 (+) 993 WP_136353457.1 L-glyceraldehyde 3-phosphate reductase -
  GMB29_RS03540 (GMB29_03540) - 679347..680549 (+) 1203 WP_136353459.1 Bcr/CflA family multidrug efflux MFS transporter -
  GMB29_RS03545 (GMB29_03545) - 680626..681015 (+) 390 WP_136353461.1 hypothetical protein -
  GMB29_RS03550 (GMB29_03550) ceuB 681686..682642 (+) 957 WP_136353463.1 ABC transporter permease Machinery gene
  GMB29_RS03555 (GMB29_03555) - 682629..683585 (+) 957 WP_136353465.1 iron chelate uptake ABC transporter family permease subunit -
  GMB29_RS03560 (GMB29_03560) - 683582..684349 (+) 768 WP_136353467.1 ABC transporter ATP-binding protein -
  GMB29_RS03565 (GMB29_03565) - 684578..685591 (+) 1014 WP_136353469.1 siderophore ABC transporter substrate-binding protein -
  GMB29_RS03570 (GMB29_03570) - 685900..686865 (+) 966 WP_136353471.1 magnesium transporter CorA family protein -
  GMB29_RS03575 (GMB29_03575) - 686984..687562 (+) 579 WP_136353473.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34911.12 Da        Isoelectric Point: 9.5670

>NTDB_id=402074 GMB29_RS03550 WP_136353463.1 681686..682642(+) (ceuB) [Metabacillus sediminilitoris strain DSL-17]
MRLWMLMIATIVLSCISLFIGAIDIKVSDLLDWDSDKTQTFLISRVPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVSYTQQVIFSFVFALVGTLIFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADLI
QNISSWLMGSFTLIIAGRYELLYVSIPAVILAYLYANKFTVAGMGEDFAKNLGLSYKLVLNIGLILVAIISTTVVLTVGI
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVFFLLVCDIIGRIVIHPYEIPVNVTVAVIGSAIFLVMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=402074 GMB29_RS03550 WP_136353463.1 681686..682642(+) (ceuB) [Metabacillus sediminilitoris strain DSL-17]
ATGAGACTATGGATGTTAATGATTGCAACTATAGTCCTGTCATGTATATCGCTATTTATCGGTGCGATTGATATCAAGGT
GAGTGACTTGCTCGATTGGGATTCGGATAAGACACAAACTTTCTTAATCAGTCGAGTGCCTCGTCTATTGGCGATTATAT
TGGCGGGAGCTGGAATGAGTATTGCGGGTCTAATTATGCAGTCTTTAAGTCGAAATAAATTTGTATCGCCAACGACTGCA
GGTACGTTAGATGCAGCAAAACTAGGTATTTTAATCTCAATGCTGTTCTTTACGAATGTTTCGTATACTCAGCAAGTTAT
TTTTAGCTTCGTATTTGCTTTAGTGGGAACATTAATTTTTATGCAGATTCTCGATCGTATTAAATTTAAAGATGTCATTT
TCGTTCCGTTAATCGGGATTATGTACGGAAATATTTTGTCATCTATCACGACATTTTTTGCATACGAAGCAGATCTTATT
CAAAATATTTCTTCTTGGTTAATGGGGAGTTTCACACTCATTATTGCTGGTCGCTATGAGCTATTATATGTAAGTATTCC
AGCGGTTATTTTAGCGTATCTTTATGCGAATAAATTTACAGTGGCTGGTATGGGAGAAGATTTTGCGAAAAACCTAGGTT
TAAGTTATAAGCTTGTATTAAATATAGGTCTTATCCTTGTTGCGATTATTTCTACAACTGTCGTACTAACTGTCGGAATT
ATTCCGTTTTTAGGCTTAATTGTGCCTAATATTGTATCTCTTTATTTAGGTGATAATTTACGCAAAACAATTCCACATAC
TGCAGTATTAGGGGTTTTCTTTCTGTTAGTATGTGACATTATTGGGCGTATTGTTATTCACCCATATGAGATTCCAGTTA
ATGTAACTGTGGCAGTAATCGGTAGTGCGATCTTCTTAGTTATGTTATTTAGGGGGAGAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4BXS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

57.807

94.654

0.547

Multiple sequence alignment