Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GK046_RS21955 Genome accession   NZ_CP046259
Coordinates   4573618..4574247 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ECO2947     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4568618..4579247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK046_RS21935 (GK046_21935) ycbZ 4569019..4570779 (-) 1761 WP_000156526.1 Lon protease family protein -
  GK046_RS21940 (GK046_21940) matP 4570965..4571417 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GK046_RS21945 (GK046_21945) ompA 4571493..4572533 (-) 1041 WP_000750416.1 porin OmpA -
  GK046_RS21950 (GK046_21950) sulA 4572890..4573399 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GK046_RS21955 (GK046_21955) sxy/tfoX 4573618..4574247 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GK046_RS21960 (GK046_21960) yccS 4574210..4576372 (-) 2163 WP_000875044.1 YccS family putative transporter -
  GK046_RS21965 (GK046_21965) yccF 4576382..4576828 (-) 447 WP_001261231.1 YccF domain-containing protein -
  GK046_RS21970 (GK046_21970) helD 4576951..4579005 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=402037 GK046_RS21955 WP_000839153.1 4573618..4574247(+) (sxy/tfoX) [Escherichia coli strain ECO2947]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=402037 GK046_RS21955 WP_000839153.1 4573618..4574247(+) (sxy/tfoX) [Escherichia coli strain ECO2947]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment