Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUT19_RS11610 Genome accession   NZ_CP054916
Coordinates   2785109..2786734 (-) Length   541 a.a.
NCBI ID   WP_176180396.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2780109..2791734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS42950 - 2781044..2781685 (+) 642 Protein_2348 murein hydrolase activator EnvC -
  HUT19_RS11595 (HUT19_11595) - 2782185..2782727 (-) 543 WP_176186770.1 TetR/AcrR family transcriptional regulator -
  HUT19_RS11600 (HUT19_11600) whiG 2782821..2783654 (-) 834 WP_176180394.1 RNA polymerase sigma factor WhiG -
  HUT19_RS11605 (HUT19_11605) dprA 2783784..2785109 (-) 1326 WP_176180395.1 DNA-processing protein DprA -
  HUT19_RS11610 (HUT19_11610) comM 2785109..2786734 (-) 1626 WP_176180396.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUT19_RS11615 (HUT19_11615) - 2786734..2787093 (-) 360 WP_176180397.1 YraN family protein -
  HUT19_RS11620 (HUT19_11620) - 2787186..2787494 (-) 309 WP_176180398.1 DUF2469 domain-containing protein -
  HUT19_RS11625 (HUT19_11625) - 2787534..2788067 (-) 534 WP_176180399.1 NUDIX hydrolase -
  HUT19_RS11630 (HUT19_11630) lepB 2788060..2788815 (-) 756 WP_176180400.1 signal peptidase I -
  HUT19_RS42955 lepB 2788963..2790051 (-) 1089 WP_254885537.1 signal peptidase I -
  HUT19_RS11640 (HUT19_11640) lepB 2790005..2791024 (-) 1020 Protein_2358 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56063.51 Da        Isoelectric Point: 6.9506

>NTDB_id=402003 HUT19_RS11610 WP_176180396.1 2785109..2786734(-) (comM) [Streptomyces sp. NA02950]
MAFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGSAWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPRQIADLMMIGELGLDGRVRPVRGVLPAVLAAAEAGYPQVVVPEQTAAEASLVPGVSVLGVRS
LRQLIAVLTDEPVPEEEHEPPEPGRPDPLLAGLTVPGAGMGSGVPAGPGSGAGSPDLADVAGQRAARGALEVAAAGGHHL
FLIGPPGAGKTMLAERLPGLLPPLTRQEALEVTAVHSVAGVLPPGQPLVDTPPYCAPHHSATMAALVGGGNGLPRPGAVS
LAHRGVLFLDEAPEFSGRALDALRQPLESGHVVVARSGGMMRMPARFLLTLAANPCPCGRHALMGEGCECTPVMVRRYQG
RLSGPLLDRVDLRVHVEAVTRAELTGARCLAESTATLAARVREARERAAARLADTPWRLNSEVPGHELRTRWQPCSGALR
EAERDMERGLLTARGLDRVLRVAWTVADLAGHDRPQAPDVARALQLRTGVSRGVPVGAGEH

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=402003 HUT19_RS11610 WP_176180396.1 2785109..2786734(-) (comM) [Streptomyces sp. NA02950]
ATGGCGTTCGCCCGCACCTGTTCGGTCGCGCTGGTCGGGGTCGAGGGGGTGGTGGTCGAGGTCCAGGCCGATCTGGAGCC
CGGGGTGGCCGCGTTCACCCTGGTCGGGCTGCCGGACAAAAGCCTGGTGGAGAGCCGGGACCGGGTCCGGGCGGCCGTGG
TGAACTCCGGATCCGCCTGGCCGCAGAAGAAGCTCACGGTGGGGCTGAGCCCGGCGTCCGTCCCCAAGGGCGGCAGCGGC
TTCGACCTGGCGGTGGCCTGTGCGGTGCTGGGCGCGGCCGAGCGCATCGACCCGCGGCAGATCGCCGATCTGATGATGAT
CGGGGAGCTGGGTCTCGACGGCCGGGTCCGCCCGGTGCGCGGGGTGCTCCCCGCGGTGCTCGCGGCTGCCGAGGCGGGCT
ATCCGCAGGTCGTCGTCCCGGAGCAGACGGCGGCCGAGGCATCGCTCGTCCCCGGGGTCTCCGTGCTCGGGGTGCGGAGT
CTGCGCCAGCTGATCGCGGTGCTGACGGATGAGCCGGTGCCCGAGGAGGAACACGAGCCACCGGAGCCGGGGCGGCCCGA
TCCGCTGCTGGCGGGGCTCACCGTGCCGGGCGCGGGCATGGGCAGCGGGGTGCCCGCGGGGCCCGGGAGCGGGGCGGGAA
GCCCCGATCTGGCCGATGTCGCCGGGCAGCGGGCCGCGCGCGGCGCCCTGGAGGTCGCGGCCGCGGGAGGTCACCATCTG
TTCCTGATCGGCCCGCCTGGCGCGGGCAAGACCATGCTCGCCGAGCGGCTCCCCGGTCTGCTGCCACCACTCACCCGGCA
GGAGGCCCTGGAGGTCACCGCGGTCCACTCGGTGGCCGGGGTACTGCCGCCCGGCCAGCCCCTGGTGGACACACCGCCGT
ACTGCGCCCCGCACCACTCGGCGACCATGGCCGCCCTCGTCGGCGGAGGCAATGGCCTGCCCCGGCCCGGCGCGGTCTCG
CTGGCCCACCGCGGGGTGCTCTTCCTGGACGAGGCCCCGGAGTTCAGCGGGCGGGCGCTGGACGCGCTGCGGCAGCCCCT
GGAATCGGGCCATGTGGTAGTGGCCCGCTCCGGAGGCATGATGCGGATGCCCGCTCGCTTCCTGCTGACGCTGGCGGCCA
ACCCCTGCCCCTGCGGACGCCACGCGCTGATGGGCGAGGGCTGCGAATGCACACCGGTGATGGTCCGCCGCTATCAGGGG
CGGTTGTCCGGGCCGCTGCTGGACCGGGTGGACCTTCGGGTCCATGTCGAGGCGGTCACCCGGGCCGAGCTGACCGGGGC
GCGCTGCCTGGCCGAGAGCACCGCGACCCTCGCGGCCCGGGTGCGGGAGGCCCGGGAGCGTGCGGCGGCCCGGCTCGCGG
ACACCCCCTGGCGGCTCAACAGCGAGGTTCCGGGGCATGAGCTCCGCACCCGGTGGCAGCCCTGCTCCGGGGCGCTCCGC
GAGGCCGAGCGGGACATGGAGCGCGGACTCCTCACCGCCCGCGGCCTGGACCGGGTGCTGCGGGTCGCCTGGACCGTCGC
CGATCTGGCCGGGCACGACCGGCCCCAGGCGCCGGATGTCGCCCGGGCCCTTCAGCTGCGCACCGGCGTCAGCCGCGGGG
TGCCGGTCGGGGCGGGGGAGCACTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-423)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(432-527)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.509

97.782

0.386
  comM Vibrio cholerae strain A1552

39.509

97.782

0.386
  comM Vibrio campbellii strain DS40M4

38.899

97.412

0.379
  comM Glaesserella parasuis strain SC1401

38.015

98.706

0.375
  comM Legionella pneumophila str. Paris

37.899

98.521

0.373
  comM Legionella pneumophila strain ERS1305867

37.899

98.521

0.373
  comM Haemophilus influenzae Rd KW20

37.853

98.152

0.372
  comM Acinetobacter baylyi ADP1

38.314

96.488

0.37
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.765

95.933

0.362

Multiple sequence alignment